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CL-CHEN-Lab / OK-Seq

R package for the analysis of OK-Seq data to study DNA replication fork directionality: from count matrices, RFD calculation to inititation/termination zone calling.
GNU General Public License v3.0
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bedgraphTobigwig error #3

Open ytang0831 opened 2 years ago

ytang0831 commented 2 years ago

Hi! I want to convert RFD bedGraph to bigwig format, but I can only get files of size 1

The command as following: sort -k1,1 -k2,2n $name.bedGraph > $name.sorted.bg bedGraphToBigWig $name.sorted.bg $txt $name.bw

How to figure out this

Yaya-LIU-bioinfo commented 2 years ago

Please leave the precise error information. Also please check your bgh file's chr coordinates are consistent with your chr.size.txt. We use hg19 for human cells.