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CLO-ontology / CLO

Communitiy-based Cell Line Ontology
https://obofoundry.org/ontology/clo.html
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Protege warning log (Illegal redeclarations of entities) #43

Open linikujp opened 6 years ago

linikujp commented 6 years ago

Level: ERROR Time: 1501036379376 Message: Illegal redeclarations of entities: reuse of entity http://purl.obolibrary.org/obo/BFO_0000062 in punning not allowed [AnnotationProperty: BFO_0000062, ObjectProperty: BFO_0000062]

Level: ERROR Time: 1501036379379 Message: Illegal redeclarations of entities: reuse of entity http://purl.obolibrary.org/obo/BFO_0000063 in punning not allowed [ObjectProperty: BFO_0000063, AnnotationProperty: BFO_0000063]

Level: ERROR Time: 1501036379379 Message: Illegal redeclarations of entities: reuse of entity http://purl.obolibrary.org/obo/RO_0002222 in punning not allowed [AnnotationProperty: RO_0002222, ObjectProperty: RO_0002222]

Level: ERROR Time: 1501036379379 Message: Illegal redeclarations of entities: reuse of entity http://purl.obolibrary.org/obo/RO_0000087 in punning not allowed [ObjectProperty: RO_0000087, AnnotationProperty: RO_0000087]

callahantiff commented 4 years ago

I can confirm that I am also seeing this error for RO_0002091 and RO_0002161 (as mentioned in issue #42):

2020-06-09 12:36:55,351 ERROR (OWLOntologyManagerImpl:1138) Illegal redeclarations of entities: reuse of entity http://purl.obolibrary.org/obo/RO_0002091 in punning not allowed [Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002091>)), Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002091>))]
2020-06-09 12:36:55,353 ERROR (OWLOntologyManagerImpl:1138) Illegal redeclarations of entities: reuse of entity http://purl.obolibrary.org/obo/BFO_0000062 in punning not allowed [Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/BFO_0000062>)), Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000062>))]
2020-06-09 12:36:55,353 ERROR (OWLOntologyManagerImpl:1138) Illegal redeclarations of entities: reuse of entity http://purl.obolibrary.org/obo/BFO_0000063 in punning not allowed [Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000063>)), Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/BFO_0000063>))]
2020-06-09 12:36:55,353 ERROR (OWLOntologyManagerImpl:1138) Illegal redeclarations of entities: reuse of entity http://purl.obolibrary.org/obo/RO_0002222 in punning not allowed [Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002222>)), Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002222>))]
2020-06-09 12:36:55,354 ERROR (OWLOntologyManagerImpl:1138) Illegal redeclarations of entities: reuse of entity http://purl.obolibrary.org/obo/RO_0000087 in punning not allowed [Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0000087>)), Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0000087>))]
2020-06-09 12:36:55,354 ERROR (OWLOntologyManagerImpl:1138) Illegal redeclarations of entities: reuse of entity http://purl.obolibrary.org/obo/RO_0002161 in punning not allowed [Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002161>)), Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002161>))]
callahantiff commented 3 years ago

I'd like to add the following classes defined as an owl:Class and an owl:ObjectProperty:

yongqunh commented 3 years ago

Got the report. Will be working on it. Thanks!

callahantiff commented 3 years ago

Got the report. Will be working on it. Thanks!

Thank you so much @yongqunh! 😄