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CNES / WASP

WASP (Weighted Average Synthesis Processor) is a C++/Python software to produce monthly cloud free images from Sentinel-2 Level 2A data obtained with MAJA software. WASP has been designed to minimize the artefacts wich are usually visible on monthly coosites. WASP works on linux environment and requires the installation of the Orfeo ToolBox (OTB).
GNU General Public License v3.0
16 stars 5 forks source link

Cannot find CompositePreprocessing in the list of OTB Apps #1

Closed borlafgis closed 5 years ago

borlafgis commented 5 years ago

Good morning

I have started making some tests with WASP by running the pre-compiled binaries in Ubuntu and in CentOS:

[roformon1@localhost GIPP_MAJA_3.1.2_TM]$ /home/roformon1/Workspace/WASP/bin/WASP --input $(find . -type f -name '*MTD_ALL.xml' | grep -v 'L2NOTV' | grep '201809') --out ../WASP --date 20180915
2019-03-19 10:12:42,086 [WARNI] No logging-path provided. No log-file will be created!
2019-03-19 10:12:42,086 [INFO ] PATH /usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/home/roformon1/.local/bin:/home/roformon1/bin:/home/roformon1/Workspace/WASP/bin
2019-03-19 10:12:42,087 [WARNI] Cannot find existing LD_LIBRARY_PATH, setting it anyway
2019-03-19 10:12:42,087 [INFO ] LD_LIBRARY_PATH /home/roformon1/Workspace/WASP/bin/../lib
2019-03-19 10:12:42,087 [WARNI] Cannot find existing OTB_APPLICATION_PATH, setting it anyway
2019-03-19 10:12:42,087 [INFO ] OTB_APPLICATION_PATH /home/roformon1/Workspace/WASP/bin/../lib/otb/applications
2019-03-19 10:12:42,456 [INFO ] Platform found: SENTINEL2
2019-03-19 10:12:42,457 [INFO ] Logging set to DEBUG
2019-03-19 10:12:44,192 [WARNI] XML-Input dates interval is smaller than 40 days!
2019-03-19 10:12:44,197 [WARNI] The given Half synthesis period of 23 days differs from the one in the datelist with 13.0 days.
2019-03-19 10:12:44,198 [INFO ] Synthesis date is: 2018-09-15T00:00:00.000Z
2019-03-19 10:12:44,198 [INFO ] Half synthesis period in days is: 23
2019-03-19 10:12:44,198 [INFO ] GDAL_CACHEMAX 16384
2019-03-19 10:12:44,198 [INFO ] ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS 24
Traceback (most recent call last):
  File "/home/roformon1/Workspace/WASP/bin/WASP.py", line 790, in <module>
    TemporalSynthesisApplication = TemporalSynthesis(args)
  File "/home/roformon1/Workspace/WASP/bin/WASP.py", line 86, in __init__
    self.checkApplicationAvailability()
  File "/home/roformon1/Workspace/WASP/bin/WASP.py", line 152, in checkApplicationAvailability
    raise NameError("Cannot find {0} in the list of OTB Apps".format(item))
NameError: Cannot find CompositePreprocessing in the list of OTB Apps

The content of the inputs is the following

[roformon1@localhost GIPP_MAJA_3.1.2_TM]$ echo $(find . -type f -name '*MTD_ALL.xml' | grep -v 'L2NOTV' | grep '201809')
./SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_MTD_ALL.xml
./SENTINEL2A_20180908-090920-708_L2A_T35TLL_C_V1-0/SENTINEL2A_20180908-090920-708_L2A_T35TLL_C_V1-0_MTD_ALL.xml ./SENTINEL2A_20180911-092025-457_L2A_T35TLL_C_V1-0/SENTINEL2A_20180911-092025-457_L2A_T35TLL_C_V1-0_MTD_ALL.xml
./SENTINEL2A_20180918-090618-462_L2A_T35TLL_C_V1-0/SENTINEL2A_20180918-090618-462_L2A_T35TLL_C_V1-0_MTD_ALL.xml ./SENTINEL2A_20180921-092023-457_L2A_T35TLL_C_V1-0/SENTINEL2A_20180921-092023-457_L2A_T35TLL_C_V1-0_MTD_ALL.xml
./SENTINEL2A_20180928-091458-214_L2A_T35TLL_C_V1-0/SENTINEL2A_20180928-091458-214_L2A_T35TLL_C_V1-0_MTD_ALL.xml ./SENTINEL2B_20180903-090935-358_L2A_T35TLL_C_V1-0/SENTINEL2B_20180903-090935-358_L2A_T35TLL_C_V1-0_MTD_ALL.xml
./SENTINEL2B_20180906-092540-554_L2A_T35TLL_C_V1-0/SENTINEL2B_20180906-092540-554_L2A_T35TLL_C_V1-0_MTD_ALL.xml ./SENTINEL2B_20180913-091528-923_L2A_T35TLL_C_V1-0/SENTINEL2B_20180913-091528-923_L2A_T35TLL_C_V1-0_MTD_ALL.xml
./SENTINEL2B_20180926-092022-459_L2A_T35TLL_C_V1-0/SENTINEL2B_20180926-092022-459_L2A_T35TLL_C_V1-0_MTD_ALL.xml

Seeing that WASP.py was being called, I digged around a bit, adding some prints... when print(availableApplications) is called within the function "checkApplicationAvailability", it produces the following output:

['BandMath', 'BandMathX', 'BinaryMorphologicalOperation', 'BlockMatching', 'BundleToPerfectSensor', 'ClassificationMapRegularization', 'ColorMapping', 'CompareImages', 'ComputeConfusionMatrix', 'ComputeImagesStatistics', 'ComputeModulusAndPhase', 'ComputeOGRLayersFeaturesStatistics', 'ComputePolylineFeatureFromImage', 'ConcatenateImages', 'ConcatenateVectorData', 'ConnectedComponentSegmentation', 'Convert', 'ConvertCartoToGeoPoint', 'ConvertSensorToGeoPoint', 'DEMConvert', 'DSFuzzyModelEstimation', 'Despeckle', 'DimensionalityReduction', 'DisparityMapToElevationMap', 'DomainTransform', 'DownloadSRTMTiles', 'EdgeExtraction', 'ExtractROI', 'FineRegistration', 'FusionOfClassifications', 'GeneratePlyFile', 'GenerateRPCSensorModel', 'GrayScaleMorphologicalOperation', 'GridBasedImageResampling', 'HaralickTextureExtraction', 'HomologousPointsExtraction', 'HooverCompareSegmentation', 'HyperspectralUnmixing', 'ImageClassifier', 'ImageEnvelope', 'KMeansClassification', 'KmzExport', 'LSMSSegmentation', 'LSMSSmallRegionsMerging', 'LSMSVectorization', 'LargeScaleMeanShift', 'LineSegmentDetection', 'LocalStatisticExtraction', 'ManageNoData', 'MeanShiftSmoothing', 'MorphologicalClassification', 'MorphologicalMultiScaleDecomposition', 'MorphologicalProfilesAnalysis', 'MultiImageSamplingRate', 'MultiResolutionPyramid', 'MultivariateAlterationDetector', 'OGRLayerClassifier', 'OSMDownloader', 'ObtainUTMZoneFromGeoPoint', 'OpticalCalibration', 'OrthoRectification', 'Pansharpening', 'PixelValue', 'PolygonClassStatistics', 'PredictRegression', 'Quicklook', 'RadiometricIndices', 'Rasterization', 'ReadImageInfo', 'RefineSensorModel', 'Rescale', 'RigidTransformResample', 'SARCalibration', 'SARDeburst', 'SARDecompositions', 'SARPolarMatrixConvert', 'SARPolarSynth', 'SFSTextureExtraction', 'SOMClassification', 'SampleExtraction', 'SampleSelection', 'Segmentation', 'Smoothing', 'SplitImage', 'StereoFramework', 'StereoRectificationGridGenerator', 'Superimpose', 'TestApplication', 'TileFusion', 'TrainImagesClassifier', 'TrainRegression', 'TrainVectorClassifier', 'VectorClassifier', 'VectorDataDSValidation', 'VectorDataExtractROI', 'VectorDataReprojection', 'VectorDataSetField', 'VectorDataTransform', 'VertexComponentAnalysis']

Where the applications that "checkApplicationAvailability" is looking for do not appear

Sorry for the inconvenience Kind regards, Ignacio

petket-5 commented 5 years ago

Hi,

Thanks for trying out WASP - And sorry for causing problems :) I will try to help. I setup two minimal VMs to test the deployment on foreign systems and both worked fine. However, it seems that you have a different version of OTB installed somewhere in your path. Does the command which otbcli in a new terminal window give you an output?

And if not, could you please try to open a terminal, and run: /home/roformon1/Workspace/WASP/bin/otbcli CompositePreprocessing and post the output here?

Kind regards, Peter

borlafgis commented 5 years ago

Hello

Thanks for your quick answer. Do not worry, I tend to stumble with anything. Is true that in the VM might be another installation of OTB, as is the one I use to run MAJA. However, when I run which otbcli I get the following output:

/usr/bin/which: no otbcli in (/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/home/roformon1/.local/bin:/home/roformon1/bin)

When I run /home/roformon1/Workspace/WASP/bin/otbcli CompositePreprocessing I get the following:

/home/roformon1/Workspace/WASP/bin/otbApplicationLauncherCommandLine: error while loading shared libraries: libOTBCommandLine-6.2.so.1: cannot open shared object file: No such file or directory

In case it was useful, I also ran 

[roformon1@localhost ~]$ cd Workspace/WASP
[roformon1@localhost WASP]$ find . -type f -name 'libOTBCommandLine*'
./lib/libOTBCommandLine-6.2.so.1
./lib/libOTBCommandLineParser-6.2.so.1

Kind regards, Ignacio

petket-5 commented 5 years ago

Hi Ignacio,

I was able to reproduce the error when using another VM. I updated both the source code and the archive (now v1.1). Could you please try re-installing?

Kind regards, Peter

borlafgis commented 5 years ago

The version available on the CNES site is still v1.0, I am missing something?

petket-5 commented 5 years ago

Only the french version was updated apparently. Now the english one should be available as well.

Peter

borlafgis commented 5 years ago

Hello

Sorry for the delay. I made a quick test with the ubuntu subsystem. In first place I deleted the old folder , and re-created it

biom7@Biometrie7:~$ rm -rf WASP
biom7@Biometrie7:~$ mkdir WASP

Afterwards I performed the installation

biom7@Biometrie7:~$ cd /mnt/d
biom7@Biometrie7:/mnt/d$ ./WASP-v1.1.run --target ~/WASP
Creating directory /home/biom7/WASP
Verifying archive integrity...  100%   All good.
Uncompressing WASP v1.1  100%
Successfully installed WASP v1.1

And re-run the command, obtaining the following output

biom7@Biometrie7:/mnt/d$ WASP --input $(find /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM -type f -name '*MTD_ALL.xml' | grep -v 'L2NOTV' | grep '201809') --out /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP --date 20180915
2019-03-21 12:53:05,967 [WARNI] No logging-path provided. No log-file will be created!
2019-03-21 12:53:05,968 [INFO ] PATH /home/biom7/WASP/bin
2019-03-21 12:53:05,968 [INFO ] LD_LIBRARY_PATH /home/biom7/WASP/bin/../lib
2019-03-21 12:53:05,968 [INFO ] OTB_APPLICATION_PATH /home/biom7/WASP/bin/../lib/otb/applications
2019-03-21 12:53:06,319 [INFO ] Platform found: SENTINEL2
2019-03-21 12:53:06,319 [INFO ] Logging set to DEBUG
2019-03-21 12:53:06,459 [WARNI] XML-Input dates interval is smaller than 40 days!
2019-03-21 12:53:06,462 [WARNI] The given Half synthesis period of 23 days differs from the one in the datelist with 13.0 days.
2019-03-21 12:53:06,463 [INFO ] Synthesis date is: 2018-09-15T00:00:00.000Z
2019-03-21 12:53:06,463 [INFO ] Half synthesis period in days is: 23
2019-03-21 12:53:06,464 [INFO ] GDAL_CACHEMAX 16384
2019-03-21 12:53:06,464 [INFO ] ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS 8
Traceback (most recent call last):
  File "/home/biom7/WASP/bin/WASP.py", line 805, in <module>
    TemporalSynthesisApplication = TemporalSynthesis(args)
  File "/home/biom7/WASP/bin/WASP.py", line 102, in __init__
    self.checkApplicationAvailability()
  File "/home/biom7/WASP/bin/WASP.py", line 168, in checkApplicationAvailability
    raise NameError("Cannot find {0} in the list of OTB Apps".format(item))
NameError: Cannot find CompositePreprocessing in the list of OTB Apps

To try and make sure the $PATH was not part of the problem I also ran 

biom7@Biometrie7:/mnt/d$ cd ~/WASP/bin
biom7@Biometrie7:~/WASP/bin$ ./WASP --input $(find /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM -type f -name '*MTD_ALL.xml' | grep -v 'L2NOTV' | grep '201809') --out /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP --date 20180915
2019-03-21 12:56:02,315 [WARNI] No logging-path provided. No log-file will be created!
2019-03-21 12:56:02,316 [INFO ] PATH /home/biom7/WASP/bin
2019-03-21 12:56:02,316 [INFO ] LD_LIBRARY_PATH /home/biom7/WASP/bin/../lib
2019-03-21 12:56:02,316 [INFO ] OTB_APPLICATION_PATH /home/biom7/WASP/bin/../lib/otb/applications
2019-03-21 12:56:02,378 [INFO ] Platform found: SENTINEL2
2019-03-21 12:56:02,379 [INFO ] Logging set to DEBUG
2019-03-21 12:56:02,495 [WARNI] XML-Input dates interval is smaller than 40 days!
2019-03-21 12:56:02,497 [WARNI] The given Half synthesis period of 23 days differs from the one in the datelist with 13.0 days.
2019-03-21 12:56:02,497 [INFO ] Synthesis date is: 2018-09-15T00:00:00.000Z
2019-03-21 12:56:02,497 [INFO ] Half synthesis period in days is: 23
2019-03-21 12:56:02,497 [INFO ] GDAL_CACHEMAX 16384
2019-03-21 12:56:02,497 [INFO ] ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS 8
Traceback (most recent call last):
  File "/home/biom7/WASP/bin/WASP.py", line 805, in <module>
    TemporalSynthesisApplication = TemporalSynthesis(args)
  File "/home/biom7/WASP/bin/WASP.py", line 102, in __init__
    self.checkApplicationAvailability()
  File "/home/biom7/WASP/bin/WASP.py", line 168, in checkApplicationAvailability
    raise NameError("Cannot find {0} in the list of OTB Apps".format(item))
NameError: Cannot find CompositePreprocessing in the list of OTB Apps

Ignacio

petket-5 commented 5 years ago

Hi Ignacio, Thanks for the update. It seems like the applications which are WASP-specific are not available when you run it or something in your setup is blocking them. Technically, the python script just ensures the consecutive execution, starting with CompositePreprocessing. It is therefore possible to launch everything manually by setting the correct environment variables. Could you please paste the following lines into a script and run it:

#!/bin/bash

YOUR_WASP_INSTALL_PATH=/home/biom7/WASP

export PATH=$YOUR_WASP_INSTALL_PATH/bin
export OTB_APPLICATION_PATH=$YOUR_WASP_INSTALL_PATH/lib/otb/applications
export LD_LIBRARY_PATH=$YOUR_WASP_INSTALL_PATH/lib

$YOUR_WASP_INSTALL_PATH/bin/otbApplicationLauncherCommandLine CompositePreprocessing -help

The variable YOUR_WASP_INSTALL_PATH points to the directory where you installed WASP. I set it to the path from your last log-file but please check whether this is still correct. The output should be the following:

$ chmod +x ./runCompositePreprocessing_manually.sh  && ./runCompositePreprocessing_manually.sh 
This is the CompositePreprocessing (CompositePreprocessing) application, version 6.2.0

Perform the directional correction of FRE Images
Tags: 

Perform the directional correction of FRE Images

Parameters: 
        -progress           <boolean>        Report progress 
        -help               <string list>    Display long help (empty list), or help for given parameters keys
MISSING -xml                <string>         Muscate L2A XML filepath  (mandatory)
        -scatteringcoeffsr1 <string>         Scattering coefficients filename R1  (optional, off by default)
        -scatteringcoeffsr2 <string>         Scattering coefficients filename R2  (optional, off by default)
        -outr1              <string> [pixel] Out Image at R1 resolution  [pixel=uint8/uint16/int16/uint32/int32/float/double] (default value is float) (optional, off by default)
        -outr2              <string> [pixel] Out Image at R2 resolution  [pixel=uint8/uint16/int16/uint32/int32/float/double] (default value is float) (optional, off by default)
        -outcld             <string> [pixel] Out cloud mask image R1 resolution  [pixel=uint8/uint16/int16/uint32/int32/float/double] (default value is float) (optional, off by default)
        -outwat             <string> [pixel] Out water mask image R1 resolution  [pixel=uint8/uint16/int16/uint32/int32/float/double] (default value is float) (optional, off by default)
        -outsnw             <string> [pixel] Out snow mask image R1 resolution  [pixel=uint8/uint16/int16/uint32/int32/float/double] (default value is float) (optional, off by default)
        -outaot             <string> [pixel] Out aot mask image R1 resolution  [pixel=uint8/uint16/int16/uint32/int32/float/double] (default value is float) (optional, off by default)
        -ram                <int32>          Available RAM (Mb)  (optional, off by default, default value is 128)
        -inxml              <string>         Load otb application from xml file  (optional, off by default)

Use -help param1 [... paramN] to see detailed documentation of those parameters.
borlafgis commented 5 years ago

Hello Peter

I created and tested the script as instructed (the path is ok), getting the following output;

bash testWasp.sh
ERROR: Could not find application "CompositePreprocessing"
ERROR: Module search path: /home/biom7/WASP/lib/otb/applications
ERROR: Available modules:
        BandMath
        BandMathX
        BinaryMorphologicalOperation
        BlockMatching
        BundleToPerfectSensor
        ClassificationMapRegularization
        ColorMapping
        CompareImages
        ComputeConfusionMatrix
        ComputeImagesStatistics
        ComputeModulusAndPhase
        ComputeOGRLayersFeaturesStatistics
        ComputePolylineFeatureFromImage
        ConcatenateImages
        ConcatenateVectorData
        ConnectedComponentSegmentation
        Convert
        ConvertCartoToGeoPoint
        ConvertSensorToGeoPoint
        DEMConvert
        DSFuzzyModelEstimation
        Despeckle
        DimensionalityReduction
        DisparityMapToElevationMap
        DomainTransform
        DownloadSRTMTiles
        EdgeExtraction
        ExtractROI
        FineRegistration
        FusionOfClassifications
        GeneratePlyFile
        GenerateRPCSensorModel
        GrayScaleMorphologicalOperation
        GridBasedImageResampling
        HaralickTextureExtraction
        HomologousPointsExtraction
        HooverCompareSegmentation
        HyperspectralUnmixing
        ImageClassifier
        ImageEnvelope
        KMeansClassification
        KmzExport
        LSMSSegmentation
        LSMSSmallRegionsMerging
        LSMSVectorization
        LargeScaleMeanShift
        LineSegmentDetection
        LocalStatisticExtraction
        ManageNoData
        MeanShiftSmoothing
        MorphologicalClassification
        MorphologicalMultiScaleDecomposition
        MorphologicalProfilesAnalysis
        MultiImageSamplingRate
        MultiResolutionPyramid
        MultivariateAlterationDetector
        OGRLayerClassifier
        OSMDownloader
        ObtainUTMZoneFromGeoPoint
        OpticalCalibration
        OrthoRectification
        Pansharpening
        PixelValue
        PolygonClassStatistics
        PredictRegression
        Quicklook
        RadiometricIndices
        Rasterization
        ReadImageInfo
        RefineSensorModel
        Rescale
        RigidTransformResample
        SARCalibration
        SARDeburst
        SARDecompositions
        SARPolarMatrixConvert
        SARPolarSynth
        SFSTextureExtraction
        SOMClassification
        SampleExtraction
        SampleSelection
        Segmentation
        Smoothing
        SplitImage
        StereoFramework
        StereoRectificationGridGenerator
        Superimpose
        TestApplication
        TileFusion
        TrainImagesClassifier
        TrainRegression
        TrainVectorClassifier
        VectorClassifier
        VectorDataDSValidation
        VectorDataExtractROI
        VectorDataReprojection
        VectorDataSetField
        VectorDataTransform
        VertexComponentAnalysis

The contents of the applications folder are:

biom7@Biometrie7:~$ ls /home/biom7/WASP/lib/otb/applications
otbapp_BandMath.so                            otbapp_ConcatenateVectorData.so           otbapp_FusionOfClassifications.so          otbapp_LocalStatisticExtraction.so              otbapp_OrthoRectification.so      otbapp_SampleSelection.so                   otbapp_TileFusion.so
otbapp_BandMathX.so                           otbapp_ConnectedComponentSegmentation.so  otbapp_GeneratePlyFile.so                  otbapp_LSMSSegmentation.so                      otbapp_OSMDownloader.so           otbapp_SARCalibration.so                    otbapp_TotalWeight.so
otbapp_BinaryMorphologicalOperation.so        otbapp_ConvertCartoToGeoPoint.so          otbapp_GenerateRPCSensorModel.so           otbapp_LSMSSmallRegionsMerging.so               otbapp_Pansharpening.so           otbapp_SARDeburst.so                        otbapp_TrainImagesClassifier.so
otbapp_BlockMatching.so                       otbapp_ConvertSensorToGeoPoint.so         otbapp_GrayScaleMorphologicalOperation.so  otbapp_LSMSVectorization.so                     otbapp_PixelValue.so              otbapp_SARDecompositions.so                 otbapp_TrainRegression.so
otbapp_BundleToPerfectSensor.so               otbapp_Convert.so                         otbapp_GridBasedImageResampling.so         otbapp_ManageNoData.so                          otbapp_PolygonClassStatistics.so  otbapp_SARPolarMatrixConvert.so             otbapp_TrainVectorClassifier.so
otbapp_ClassificationMapRegularization.so     otbapp_DEMConvert.so                      otbapp_HaralickTextureExtraction.so        otbapp_MeanShiftSmoothing.so                    otbapp_PredictRegression.so       otbapp_SARPolarSynth.so                     otbapp_UpdateSynthesis.so
otbapp_ColorMapping.so                        otbapp_Despeckle.so                       otbapp_HomologousPointsExtraction.so       otbapp_MorphologicalClassification.so           otbapp_ProductFormatter.so        otbapp_Segmentation.so                      otbapp_VectorClassifier.so
otbapp_CompareImages.so                       otbapp_DimensionalityReduction.so         otbapp_HooverCompareSegmentation.so        otbapp_MorphologicalMultiScaleDecomposition.so  otbapp_Quicklook.so               otbapp_SFSTextureExtraction.so              otbapp_VectorDataDSValidation.so
otbapp_CompositePreprocessing.so              otbapp_DisparityMapToElevationMap.so      otbapp_HyperspectralUnmixing.so            otbapp_MorphologicalProfilesAnalysis.so         otbapp_RadiometricIndices.so      otbapp_Smoothing.so                         otbapp_VectorDataExtractROI.so
otbapp_ComputeConfusionMatrix.so              otbapp_DomainTransform.so                 otbapp_ImageClassifier.so                  otbapp_MultiImageSamplingRate.so                otbapp_Rasterization.so           otbapp_SOMClassification.so                 otbapp_VectorDataReprojection.so
otbapp_ComputeImagesStatistics.so             otbapp_DownloadSRTMTiles.so               otbapp_ImageEnvelope.so                    otbapp_MultiResolutionPyramid.so                otbapp_ReadImageInfo.so           otbapp_SplitImage.so                        otbapp_VectorDataSetField.so
otbapp_ComputeModulusAndPhase.so              otbapp_DSFuzzyModelEstimation.so          otbapp_KMeansClassification.so             otbapp_MultivariateAlterationDetector.so        otbapp_RefineSensorModel.so       otbapp_StereoFramework.so                   otbapp_VectorDataTransform.so
otbapp_ComputeOGRLayersFeaturesStatistics.so  otbapp_EdgeExtraction.so                  otbapp_KmzExport.so                        otbapp_ObtainUTMZoneFromGeoPoint.so             otbapp_Rescale.so                 otbapp_StereoRectificationGridGenerator.so  otbapp_VertexComponentAnalysis.so
otbapp_ComputePolylineFeatureFromImage.so     otbapp_ExtractROI.so                      otbapp_LargeScaleMeanShift.so              otbapp_OGRLayerClassifier.so                    otbapp_RigidTransformResample.so  otbapp_Superimpose.so                       otbapp_WeightAOT.so
otbapp_ConcatenateImages.so                   otbapp_FineRegistration.so                otbapp_LineSegmentDetection.so             otbapp_OpticalCalibration.so                    otbapp_SampleExtraction.so        otbapp_TestApplication.so                   otbapp_WeightOnClouds.so

The contents of the lib folder are:

biom7@Biometrie7:~$ ls /home/biom7/WASP/lib/
cmake                                   libfftw3f.so.3              libhdf5.a                          libITKPolynomials-4.12.so.1       libmuparser.so                    libOTBEdge-6.2.so                 libOTBMathParserX-6.2.so            libOTBSupervised-6.2.so        libqwt.so.6
engines                                 libfftw3f.so.3.4.4          libhdf5_hl.a                       libITKQuadEdgeMesh-4.12.so        libmuparserx.so                   libOTBEdge-6.2.so.1               libOTBMathParserX-6.2.so.1          libOTBSupervised-6.2.so.1      libqwt.so.6.1
gdalplugins                             libfftw3f_threads.la        libhdf5_hl.so                      libITKQuadEdgeMesh-4.12.so.1      libmuparserx.so.4.0.7             libOTBExtendedFilename-6.2.so     libOTBMetadata-6.2.so               libOTBTestKernel-6.2.so        libqwt.so.6.1.3
libboost_chrono.a                       libfftw3f_threads.so        libhdf5_hl.so.100.1.0              libITKSpatialObjects-4.12.so      libMuscateMetadata.so             libOTBExtendedFilename-6.2.so.1   libOTBMetadata-6.2.so.1             libOTBTestKernel-6.2.so.1      libshark.so
libboost_chrono.so                      libfftw3f_threads.so.3      libhdf5_hl.so.1.10.1               libITKSpatialObjects-4.12.so.1    libnetcdf.settings                libOTBFuzzy-6.2.so                libOTBMonteverdi-6.2.so             libOTBTransform-6.2.so         libshark.so.0
libboost_chrono.so.1.60.0               libfftw3f_threads.so.3.4.4  libhdf5.settings                   libITKStatistics-4.12.so          libnetcdf.so                      libOTBFuzzy-6.2.so.1              libOTBMonteverdi-6.2.so.1           libOTBTransform-6.2.so.1       libshark.so.3.0.0
libboost_date_time.so                   libfftw3.la                 libhdf5.so                         libITKStatistics-4.12.so.1        libnetcdf.so.11                   libOTBGdalAdapters-6.2.so         libOTBMonteverdiCore-6.2.so         libOTBVectorDataBase-6.2.so    libsqlite3.so
libboost_date_time.so.1.60.0            libfftw3.so                 libhdf5.so.100.1.0                 libitksys-4.12.so                 libnetcdf.so.11.4.0               libOTBGdalAdapters-6.2.so.1       libOTBMonteverdiCore-6.2.so.1       libOTBVectorDataBase-6.2.so.1  libssl.so
libboost_filesystem.so                  libfftw3.so.3               libhdf5.so.1.10.1                  libitksys-4.12.so.1               libopencv_core.so                 libOTBIce-6.2.so                  libOTBMonteverdiGUI-6.2.so          libOTBVectorDataIO-6.2.so      libssl.so.1.0.0
libboost_filesystem.so.1.60.0           libfftw3.so.3.4.4           libITKBiasCorrection-4.12.so       libITKTransform-4.12.so           libopencv_core.so.2.4             libOTBIce-6.2.so.1                libOTBMonteverdiGUI-6.2.so.1        libOTBVectorDataIO-6.2.so.1    libsvm.so
libboost_prg_exec_monitor.so            libfftw3_threads.la         libITKBiasCorrection-4.12.so.1     libITKTransform-4.12.so.1         libopencv_core.so.2.4.13          libOTBIceViewer-6.2.so            libOTBOpenThreadsAdapters-6.2.so    libOTBWavelet-6.2.so           libtiff.so
libboost_prg_exec_monitor.so.1.60.0     libfftw3_threads.so         libITKCommon-4.12.so               libitkv3p_netlib-4.12.so          libopencv_ml.so                   libOTBIceViewer-6.2.so.1          libOTBOpenThreadsAdapters-6.2.so.1  libOTBWavelet-6.2.so.1         libtiff.so.5
libboost_program_options.so             libfftw3_threads.so.3       libITKCommon-4.12.so.1             libitkv3p_netlib-4.12.so.1        libopencv_ml.so.2.4               libOTBImageBase-6.2.so            libOTBOpticalCalibration-6.2.so     libpng.so                      libtiff.so.5.2.6
libboost_program_options.so.1.60.0      libfftw3_threads.so.3.4.4   libitkdouble-conversion-4.12.so    libitkvcl-4.12.so                 libopencv_ml.so.2.4.13            libOTBImageBase-6.2.so.1          libOTBOpticalCalibration-6.2.so.1   libpng.so.1                    libtinyxml.so
libboost_serialization.so               libfreetype.so              libitkdouble-conversion-4.12.so.1  libitkvcl-4.12.so.1               libopenjp2.a                      libOTBImageIO-6.2.so              libOTBOSSIMAdapters-6.2.so          libpng.so.1.6.16               libturbojpeg.la
libboost_serialization.so.1.60.0        libgdal.la                  libITKFFT-4.12.so                  libitkvnl-4.12.so                 libopenjp2.so                     libOTBImageIO-6.2.so.1            libOTBOSSIMAdapters-6.2.so.1        libproj.so                     libturbojpeg.so
libboost_system.a                       libgdal.so                  libITKFFT-4.12.so.1                libitkvnl-4.12.so.1               libopenjp2.so.2.2.0               libOTBImageManipulation-6.2.so    libotbossimplugins-6.2.so           libproj.so.12                  libturbojpeg.so.0
libboost_system.so                      libgdal.so.20               libITKIOImageBase-4.12.so          libitkvnl_algo-4.12.so            libopenjp2.so.7                   libOTBImageManipulation-6.2.so.1  libotbossimplugins-6.2.so.1         libproj.so.12.0.0              libturbojpeg.so.0.1.0
libboost_system.so.1.60.0               libgdal.so.20.3.0           libITKIOImageBase-4.12.so.1        libitkvnl_algo-4.12.so.1          libOpenThreads.so                 libOTBIOBSQ-6.2.so                libOTBPolarimetry-6.2.so            libpython3.6m.a                liburiparser.so
libboost_test_exec_monitor.a            libgeos_c.so                libITKKLMRegionGrowing-4.12.so     libITKVNLInstantiation-4.12.so    libOpenThreads.so.20              libOTBIOBSQ-6.2.so.1              libOTBPolarimetry-6.2.so.1          libQtCore.la                   libz.so
libboost_thread.so                      libgeos_c.so.1              libITKKLMRegionGrowing-4.12.so.1   libITKVNLInstantiation-4.12.so.1  libOpenThreads.so.3.3.0           libOTBIOGDAL-6.2.so               libOTBProjection-6.2.so             libQtCore.prl                  libz.so.1
libboost_thread.so.1.60.0               libgeos_c.so.1.10.1         libITKLabelMap-4.12.so             libITKWatersheds-4.12.so          libossim.so                       libOTBIOGDAL-6.2.so.1             libOTBProjection-6.2.so.1           libQtCore.so                   libz.so.1.2.8
libboost_timer.a                        libgeos.so                  libITKLabelMap-4.12.so.1           libITKWatersheds-4.12.so.1        libossim.so.1                     libOTBIOKML-6.2.so                libOTBQtAdapters-6.2.so             libQtCore.so.4                 openjpeg-2.2
libboost_timer.so                       libgeos.so.3.6.1            libITKMesh-4.12.so                 libjpeg.la                        libossim.so.1.8.20                libOTBIOKML-6.2.so.1              libOTBQtAdapters-6.2.so.1           libQtCore.so.4.8               otb
libboost_timer.so.1.60.0                libgeotiff.a                libITKMesh-4.12.so.1               libjpeg.so                        libotb6S-6.2.so                   libOTBIOLUM-6.2.so                libOTBQtWidget-6.2.so               libQtCore.so.4.8.7             otbapp_CompositePreprocessing.so
libboost_unit_test_framework.so         libgeotiff.so               libITKMetaIO-4.12.so               libjpeg.so.62                     libotb6S-6.2.so.1                 libOTBIOLUM-6.2.so.1              libOTBQtWidget-6.2.so.1             libQtGui.la                    otbapp_ProductFormatter.so
libboost_unit_test_framework.so.1.60.0  libgeotiff.so.2             libITKMetaIO-4.12.so.1             libjpeg.so.62.1.0                 libOTBApplicationEngine-6.2.so    libOTBIOMSTAR-6.2.so              libOTBRCC8-6.2.so                   libQtGui.prl                   otbapp_TotalWeight.so
libboost_wserialization.so              libgeotiff.so.2.1.2         libitknetlib-4.12.so               libkmlbase.so                     libOTBApplicationEngine-6.2.so.1  libOTBIOMSTAR-6.2.so.1            libOTBRCC8-6.2.so.1                 libQtGui.so                    otbapp_UpdateSynthesis.so
libboost_wserialization.so.1.60.0       libGLEWmx.so                libitknetlib-4.12.so.1             libkmlconvenience.so              libOTBCarto-6.2.so                libOTBIOONERA-6.2.so              libOTBSampling-6.2.so               libQtGui.so.4                  otbapp_WeightAOT.so
libcrypto.so                            libGLEW.so                  libitkNetlibSlatec-4.12.so         libkmldom.so                      libOTBCarto-6.2.so.1              libOTBIOONERA-6.2.so.1            libOTBSampling-6.2.so.1             libQtGui.so.4.8                otbapp_WeightOnClouds.so
libcrypto.so.1.0.0                      libglfw.so                  libitkNetlibSlatec-4.12.so.1       libkmlengine.so                   libOTBCommandLine-6.2.so          libOTBIORAD-6.2.so                libotbsiftfast-6.2.so               libQtGui.so.4.8.7              pkgconfig
libcurl.so                              libglfw.so.3                libITKOptimizers-4.12.so           libkmlregionator.so               libOTBCommandLine-6.2.so.1        libOTBIORAD-6.2.so.1              libotbsiftfast-6.2.so.1             libQtOpenGL.la                 python3.6
libdfalt.a                              libglfw.so.3.1              libITKOptimizers-4.12.so.1         libkmlxsd.so                      libOTBCommandLineParser-6.2.so    libOTBIOTileMap-6.2.so            libOTBSimulation-6.2.so             libQtOpenGL.prl
libdfalt.so                             libglut.la                  libITKOptimizersv4-4.12.so         libMetadataHelper.so              libOTBCommandLineParser-6.2.so.1  libOTBIOTileMap-6.2.so.1          libOTBSimulation-6.2.so.1           libQtOpenGL.so
libdfalt.so.4.2.13                      libglut.so                  libITKOptimizersv4-4.12.so.1       libmfhdfalt.a                     libOTBCommon-6.2.so               libOTBMapla-6.2.so                libOTBStatistics-6.2.so             libQtOpenGL.so.4
libexpat.so                             libglut.so.3                libITKPath-4.12.so                 libmfhdfalt.so                    libOTBCommon-6.2.so.1             libOTBMapla-6.2.so.1              libOTBStatistics-6.2.so.1           libQtOpenGL.so.4.8
libfftw3f.la                            libglut.so.3.9.0            libITKPath-4.12.so.1               libmfhdfalt.so.4.2.13             libOTBCurlAdapters-6.2.so         libOTBMathParser-6.2.so           libOTBStreaming-6.2.so              libQtOpenGL.so.4.8.7
libfftw3f.so                            libhdf4.settings            libITKPolynomials-4.12.so          libminizip.so                     libOTBCurlAdapters-6.2.so.1       libOTBMathParser-6.2.so.1         libOTBStreaming-6.2.so.1            libqwt.so

Thanks a lot for your help

petket-5 commented 5 years ago

Same output as from python - This didn't help unfortuntely. If you append ldd $YOUR_WASP_INSTALL_PATH/lib/otbapp_CompositePreprocessing.so and ldd $YOUR_WASP_INSTALL_PATH/lib/otb/applications/otbapp_CompositePreprocessing.so to the script, what output do you get? I have troubles recreating your system with my current VM distrib setup. Could you please run cat /etc/*release && uname -a for further debugging?

In any case, sorry for not being able to solve the problem with the binary package until now and for bearing with me! I will still try to solve this issue, but if you want to advance in the meantime with WASP you can compile it yourself.

Kind regards, Peter

borlafgis commented 5 years ago

Hello

modified the script to read the following:

biom7@Biometrie7:~$ cat testWasp.sh
#!/bin/bash

YOUR_WASP_INSTALL_PATH=/home/biom7/WASP

ldd $YOUR_WASP_INSTALL_PATH/lib/otbapp_CompositePreprocessing.so
ldd $YOUR_WASP_INSTALL_PATH/lib/otb/applications/otbapp_CompositePreprocessing.so

export PATH=$YOUR_WASP_INSTALL_PATH/bin
export OTB_APPLICATION_PATH=$YOUR_WASP_INSTALL_PATH/lib/otb/applications
export LD_LIBRARY_PATH=$YOUR_WASP_INSTALL_PATH/lib

# $YOUR_WASP_INSTALL_PATH/bin/otbApplicationLauncherCommandLine CompositePreprocessing -help

When executed, it produces the following output

biom7@Biometrie7:~$ bash testWasp.sh
        linux-vdso.so.1 =>  (0x00007ffff5756000)
        libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f7104000000)
        libgdal.so.20 => not found
        libOpenThreads.so.20 => not found
        libossim.so.1 => not found
        libgeotiff.so.2 => not found
        libtinyxml.so => not found
        libcurl.so => /usr/lib/x86_64-linux-gnu/libcurl.so (0x00007f7103d70000)
        libkmlbase.so => not found
        libkmldom.so => not found
        libkmlengine.so => not found
        libOTBFuzzy-6.2.so.1 => not found
        libmuparser.so => not found
        libOTBMathParser-6.2.so.1 => not found
        libshark.so.0 => not found
        libboost_serialization.so.1.60.0 => not found
        libsvm.so => not found
        libopencv_core.so.2.4 => not found
        libopencv_ml.so.2.4 => not found
        libOTBSupervised-6.2.so.1 => not found
        libOTBSampling-6.2.so.1 => not found
        libotbsiftfast-6.2.so.1 => not found
        libOTBWavelet-6.2.so.1 => not found
        libOTBEdge-6.2.so.1 => not found
        libmuparserx.so.4.0.7 => not found
        libOTBMathParserX-6.2.so.1 => not found
        libOTBPolarimetry-6.2.so.1 => not found
        libOTBCommandLine-6.2.so.1 => not found
        libOTBCommandLineParser-6.2.so.1 => not found
        libGLU.so.1 => not found
        libGL.so.1 => /usr/lib/x86_64-linux-gnu/mesa/libGL.so.1 (0x00007f7103a70000)
        libglfw.so.3 => not found
        libGLEW.so => not found
        libglut.so.3 => not found
        libOTBIceViewer-6.2.so.1 => not found
        libQtOpenGL.so.4 => not found
        libQtGui.so.4 => not found
        libQtCore.so.4 => not found
        libqwt.so.6 => not found
        libOTBMapla-6.2.so.1 => not found
        libOTBMonteverdi-6.2.so.1 => not found
        libOTBOpenThreadsAdapters-6.2.so.1 => not found
        libOTBRCC8-6.2.so.1 => not found
        libOTBSimulation-6.2.so.1 => not found
        libOTBTestKernel-6.2.so.1 => not found
        libMetadataHelper.so => not found
        libOTBMonteverdiGUI-6.2.so.1 => not found
        libOTBIce-6.2.so.1 => not found
        libOTBMonteverdiCore-6.2.so.1 => not found
        libOTBStatistics-6.2.so.1 => not found
        libOTBCarto-6.2.so.1 => not found
        libOTBQtWidget-6.2.so.1 => not found
        libOTBApplicationEngine-6.2.so.1 => not found
        libOTBVectorDataIO-6.2.so.1 => not found
        libOTBIOKML-6.2.so.1 => not found
        libOTBProjection-6.2.so.1 => not found
        libOTBQtAdapters-6.2.so.1 => not found
        libOTBOpticalCalibration-6.2.so.1 => not found
        libotb6S-6.2.so.1 => not found
        libOTBImageIO-6.2.so.1 => not found
        libOTBExtendedFilename-6.2.so.1 => not found
        libOTBIOBSQ-6.2.so.1 => not found
        libOTBIOLUM-6.2.so.1 => not found
        libOTBIOMSTAR-6.2.so.1 => not found
        libOTBIOONERA-6.2.so.1 => not found
        libOTBIORAD-6.2.so.1 => not found
        libOTBIOTileMap-6.2.so.1 => not found
        libOTBIOGDAL-6.2.so.1 => not found
        libOTBGdalAdapters-6.2.so.1 => not found
        libOTBVectorDataBase-6.2.so.1 => not found
        libOTBCurlAdapters-6.2.so.1 => not found
        libOTBImageManipulation-6.2.so.1 => not found
        libOTBStreaming-6.2.so.1 => not found
        libOTBImageBase-6.2.so.1 => not found
        libOTBMetadata-6.2.so.1 => not found
        libOTBTransform-6.2.so.1 => not found
        libOTBOSSIMAdapters-6.2.so.1 => not found
        libotbossimplugins-6.2.so.1 => not found
        libMuscateMetadata.so => not found
        libOTBCommon-6.2.so.1 => not found
        libITKQuadEdgeMesh-4.12.so.1 => not found
        libITKMetaIO-4.12.so.1 => not found
        libITKLabelMap-4.12.so.1 => not found
        libITKIOImageBase-4.12.so.1 => not found
        libITKBiasCorrection-4.12.so.1 => not found
        libITKPolynomials-4.12.so.1 => not found
        libITKFFT-4.12.so.1 => not found
        libfftw3.so.3 => /usr/lib/x86_64-linux-gnu/libfftw3.so.3 (0x00007f7103510000)
        libfftw3_threads.so.3 => /usr/lib/x86_64-linux-gnu/libfftw3_threads.so.3 (0x00007f7103300000)
        libfftw3f.so.3 => /usr/lib/x86_64-linux-gnu/libfftw3f.so.3 (0x00007f7102ef0000)
        libfftw3f_threads.so.3 => /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so.3 (0x00007f7102cd0000)
        libITKOptimizersv4-4.12.so.1 => not found
        libITKOptimizers-4.12.so.1 => not found
        libITKKLMRegionGrowing-4.12.so.1 => not found
        libITKWatersheds-4.12.so.1 => not found
        libITKStatistics-4.12.so.1 => not found
        libitkNetlibSlatec-4.12.so.1 => not found
        libITKSpatialObjects-4.12.so.1 => not found
        libITKMesh-4.12.so.1 => not found
        libITKTransform-4.12.so.1 => not found
        libITKPath-4.12.so.1 => not found
        libITKCommon-4.12.so.1 => not found
        libitksys-4.12.so.1 => not found
        libITKVNLInstantiation-4.12.so.1 => not found
        libitkvnl_algo-4.12.so.1 => not found
        libitkvnl-4.12.so.1 => not found
        libitkv3p_netlib-4.12.so.1 => not found
        libitknetlib-4.12.so.1 => not found
        libitkvcl-4.12.so.1 => not found
        libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f7102a40000)
        libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f7102730000)
        libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f7102510000)
        libboost_unit_test_framework.so.1.60.0 => not found
        libboost_filesystem.so.1.60.0 => not found
        libboost_system.so.1.60.0 => not found
        libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f7102170000)
        libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f7101f50000)
        libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f7101b70000)
        libidn.so.11 => /usr/lib/x86_64-linux-gnu/libidn.so.11 (0x00007f7101930000)
        librtmp.so.1 => /usr/lib/x86_64-linux-gnu/librtmp.so.1 (0x00007f7101710000)
        libnettle.so.6 => /usr/lib/x86_64-linux-gnu/libnettle.so.6 (0x00007f71014c0000)
        libgnutls.so.30 => /usr/lib/x86_64-linux-gnu/libgnutls.so.30 (0x00007f7101190000)
        libgssapi_krb5.so.2 => /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2 (0x00007f7100f40000)
        liblber-2.4.so.2 => /usr/lib/x86_64-linux-gnu/liblber-2.4.so.2 (0x00007f7100d20000)
        libldap_r-2.4.so.2 => /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2 (0x00007f7100ac0000)
        libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007f7100890000)
        libxcb-dri3.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-dri3.so.0 (0x00007f7100670000)
        libxcb-present.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-present.so.0 (0x00007f7100460000)
        libxcb-sync.so.1 => /usr/lib/x86_64-linux-gnu/libxcb-sync.so.1 (0x00007f7100250000)
        libxshmfence.so.1 => /usr/lib/x86_64-linux-gnu/libxshmfence.so.1 (0x00007f7100030000)
        libglapi.so.0 => /usr/lib/x86_64-linux-gnu/libglapi.so.0 (0x00007f70ffdf0000)
        libXext.so.6 => /usr/lib/x86_64-linux-gnu/libXext.so.6 (0x00007f70ffbd0000)
        libXdamage.so.1 => /usr/lib/x86_64-linux-gnu/libXdamage.so.1 (0x00007f70ff9b0000)
        libXfixes.so.3 => /usr/lib/x86_64-linux-gnu/libXfixes.so.3 (0x00007f70ff7a0000)
        libX11-xcb.so.1 => /usr/lib/x86_64-linux-gnu/libX11-xcb.so.1 (0x00007f70ff590000)
        libX11.so.6 => /usr/lib/x86_64-linux-gnu/libX11.so.6 (0x00007f70ff240000)
        libxcb-glx.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-glx.so.0 (0x00007f70ff020000)
        libxcb-dri2.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-dri2.so.0 (0x00007f70fee10000)
        libxcb.so.1 => /usr/lib/x86_64-linux-gnu/libxcb.so.1 (0x00007f70febd0000)
        libXxf86vm.so.1 => /usr/lib/x86_64-linux-gnu/libXxf86vm.so.1 (0x00007f70fe9c0000)
        libdrm.so.2 => /usr/lib/x86_64-linux-gnu/libdrm.so.2 (0x00007f70fe7a0000)
        /lib64/ld-linux-x86-64.so.2 (0x00007f7104600000)
        libhogweed.so.4 => /usr/lib/x86_64-linux-gnu/libhogweed.so.4 (0x00007f70fe550000)
        libgmp.so.10 => /usr/lib/x86_64-linux-gnu/libgmp.so.10 (0x00007f70fe2d0000)
        libp11-kit.so.0 => /usr/lib/x86_64-linux-gnu/libp11-kit.so.0 (0x00007f70fe050000)
        libtasn1.so.6 => /usr/lib/x86_64-linux-gnu/libtasn1.so.6 (0x00007f70fde30000)
        libkrb5.so.3 => /usr/lib/x86_64-linux-gnu/libkrb5.so.3 (0x00007f70fdb50000)
        libk5crypto.so.3 => /usr/lib/x86_64-linux-gnu/libk5crypto.so.3 (0x00007f70fd910000)
        libcom_err.so.2 => /lib/x86_64-linux-gnu/libcom_err.so.2 (0x00007f70fd700000)
        libkrb5support.so.0 => /usr/lib/x86_64-linux-gnu/libkrb5support.so.0 (0x00007f70fd4f0000)
        libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2 (0x00007f70fd2c0000)
        libsasl2.so.2 => /usr/lib/x86_64-linux-gnu/libsasl2.so.2 (0x00007f70fd0a0000)
        libgssapi.so.3 => /usr/lib/x86_64-linux-gnu/libgssapi.so.3 (0x00007f70fce50000)
        libXau.so.6 => /usr/lib/x86_64-linux-gnu/libXau.so.6 (0x00007f70fcc30000)
        libXdmcp.so.6 => /usr/lib/x86_64-linux-gnu/libXdmcp.so.6 (0x00007f70fca20000)
        libffi.so.6 => /usr/lib/x86_64-linux-gnu/libffi.so.6 (0x00007f70fc800000)
        libkeyutils.so.1 => /lib/x86_64-linux-gnu/libkeyutils.so.1 (0x00007f70fc5f0000)
        libheimntlm.so.0 => /usr/lib/x86_64-linux-gnu/libheimntlm.so.0 (0x00007f70fc3d0000)
        libkrb5.so.26 => /usr/lib/x86_64-linux-gnu/libkrb5.so.26 (0x00007f70fc140000)
        libasn1.so.8 => /usr/lib/x86_64-linux-gnu/libasn1.so.8 (0x00007f70fbe90000)
        libhcrypto.so.4 => /usr/lib/x86_64-linux-gnu/libhcrypto.so.4 (0x00007f70fbc40000)
        libroken.so.18 => /usr/lib/x86_64-linux-gnu/libroken.so.18 (0x00007f70fba20000)
        libwind.so.0 => /usr/lib/x86_64-linux-gnu/libwind.so.0 (0x00007f70fb7f0000)
        libheimbase.so.1 => /usr/lib/x86_64-linux-gnu/libheimbase.so.1 (0x00007f70fb5d0000)
        libhx509.so.5 => /usr/lib/x86_64-linux-gnu/libhx509.so.5 (0x00007f70fb380000)
        libsqlite3.so.0 => /usr/lib/x86_64-linux-gnu/libsqlite3.so.0 (0x00007f70fb0a0000)
        libcrypt.so.1 => /lib/x86_64-linux-gnu/libcrypt.so.1 (0x00007f70fae50000)
        linux-vdso.so.1 =>  (0x00007fffeca56000)
        libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f7877b40000)
        libgdal.so.20 => not found
        libOpenThreads.so.20 => not found
        libossim.so.1 => not found
        libgeotiff.so.2 => not found
        libtinyxml.so => not found
        libcurl.so => /usr/lib/x86_64-linux-gnu/libcurl.so (0x00007f78778b0000)
        libkmlbase.so => not found
        libkmldom.so => not found
        libkmlengine.so => not found
        libOTBFuzzy-6.2.so.1 => not found
        libmuparser.so => not found
        libOTBMathParser-6.2.so.1 => not found
        libshark.so.0 => not found
        libboost_serialization.so.1.60.0 => not found
        libsvm.so => not found
        libopencv_core.so.2.4 => not found
        libopencv_ml.so.2.4 => not found
        libOTBSupervised-6.2.so.1 => not found
        libOTBSampling-6.2.so.1 => not found
        libotbsiftfast-6.2.so.1 => not found
        libOTBWavelet-6.2.so.1 => not found
        libOTBEdge-6.2.so.1 => not found
        libmuparserx.so.4.0.7 => not found
        libOTBMathParserX-6.2.so.1 => not found
        libOTBPolarimetry-6.2.so.1 => not found
        libOTBCommandLine-6.2.so.1 => not found
        libOTBCommandLineParser-6.2.so.1 => not found
        libGLU.so.1 => not found
        libGL.so.1 => /usr/lib/x86_64-linux-gnu/mesa/libGL.so.1 (0x00007f78775b0000)
        libglfw.so.3 => not found
        libGLEW.so => not found
        libglut.so.3 => not found
        libOTBIceViewer-6.2.so.1 => not found
        libQtOpenGL.so.4 => not found
        libQtGui.so.4 => not found
        libQtCore.so.4 => not found
        libqwt.so.6 => not found
        libOTBMapla-6.2.so.1 => not found
        libOTBMonteverdi-6.2.so.1 => not found
        libOTBOpenThreadsAdapters-6.2.so.1 => not found
        libOTBRCC8-6.2.so.1 => not found
        libOTBSimulation-6.2.so.1 => not found
        libOTBTestKernel-6.2.so.1 => not found
        libMetadataHelper.so => not found
        libOTBMonteverdiGUI-6.2.so.1 => not found
        libOTBIce-6.2.so.1 => not found
        libOTBMonteverdiCore-6.2.so.1 => not found
        libOTBStatistics-6.2.so.1 => not found
        libOTBCarto-6.2.so.1 => not found
        libOTBQtWidget-6.2.so.1 => not found
        libOTBApplicationEngine-6.2.so.1 => not found
        libOTBVectorDataIO-6.2.so.1 => not found
        libOTBIOKML-6.2.so.1 => not found
        libOTBProjection-6.2.so.1 => not found
        libOTBQtAdapters-6.2.so.1 => not found
        libOTBOpticalCalibration-6.2.so.1 => not found
        libotb6S-6.2.so.1 => not found
        libOTBImageIO-6.2.so.1 => not found
        libOTBExtendedFilename-6.2.so.1 => not found
        libOTBIOBSQ-6.2.so.1 => not found
        libOTBIOLUM-6.2.so.1 => not found
        libOTBIOMSTAR-6.2.so.1 => not found
        libOTBIOONERA-6.2.so.1 => not found
        libOTBIORAD-6.2.so.1 => not found
        libOTBIOTileMap-6.2.so.1 => not found
        libOTBIOGDAL-6.2.so.1 => not found
        libOTBGdalAdapters-6.2.so.1 => not found
        libOTBVectorDataBase-6.2.so.1 => not found
        libOTBCurlAdapters-6.2.so.1 => not found
        libOTBImageManipulation-6.2.so.1 => not found
        libOTBStreaming-6.2.so.1 => not found
        libOTBImageBase-6.2.so.1 => not found
        libOTBMetadata-6.2.so.1 => not found
        libOTBTransform-6.2.so.1 => not found
        libOTBOSSIMAdapters-6.2.so.1 => not found
        libotbossimplugins-6.2.so.1 => not found
        libMuscateMetadata.so => not found
        libOTBCommon-6.2.so.1 => not found
        libITKQuadEdgeMesh-4.12.so.1 => not found
        libITKMetaIO-4.12.so.1 => not found
        libITKLabelMap-4.12.so.1 => not found
        libITKIOImageBase-4.12.so.1 => not found
        libITKBiasCorrection-4.12.so.1 => not found
        libITKPolynomials-4.12.so.1 => not found
        libITKFFT-4.12.so.1 => not found
        libfftw3.so.3 => /usr/lib/x86_64-linux-gnu/libfftw3.so.3 (0x00007f7877050000)
        libfftw3_threads.so.3 => /usr/lib/x86_64-linux-gnu/libfftw3_threads.so.3 (0x00007f7876e40000)
        libfftw3f.so.3 => /usr/lib/x86_64-linux-gnu/libfftw3f.so.3 (0x00007f7876a30000)
        libfftw3f_threads.so.3 => /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so.3 (0x00007f7876810000)
        libITKOptimizersv4-4.12.so.1 => not found
        libITKOptimizers-4.12.so.1 => not found
        libITKKLMRegionGrowing-4.12.so.1 => not found
        libITKWatersheds-4.12.so.1 => not found
        libITKStatistics-4.12.so.1 => not found
        libitkNetlibSlatec-4.12.so.1 => not found
        libITKSpatialObjects-4.12.so.1 => not found
        libITKMesh-4.12.so.1 => not found
        libITKTransform-4.12.so.1 => not found
        libITKPath-4.12.so.1 => not found
        libITKCommon-4.12.so.1 => not found
        libitksys-4.12.so.1 => not found
        libITKVNLInstantiation-4.12.so.1 => not found
        libitkvnl_algo-4.12.so.1 => not found
        libitkvnl-4.12.so.1 => not found
        libitkv3p_netlib-4.12.so.1 => not found
        libitknetlib-4.12.so.1 => not found
        libitkvcl-4.12.so.1 => not found
        libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f7876580000)
        libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f7876270000)
        libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f7876050000)
        libboost_unit_test_framework.so.1.60.0 => not found
        libboost_filesystem.so.1.60.0 => not found
        libboost_system.so.1.60.0 => not found
        libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f7875cb0000)
        libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f7875a90000)
        libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f78756b0000)
        libidn.so.11 => /usr/lib/x86_64-linux-gnu/libidn.so.11 (0x00007f7875470000)
        librtmp.so.1 => /usr/lib/x86_64-linux-gnu/librtmp.so.1 (0x00007f7875250000)
        libnettle.so.6 => /usr/lib/x86_64-linux-gnu/libnettle.so.6 (0x00007f7875000000)
        libgnutls.so.30 => /usr/lib/x86_64-linux-gnu/libgnutls.so.30 (0x00007f7874cd0000)
        libgssapi_krb5.so.2 => /usr/lib/x86_64-linux-gnu/libgssapi_krb5.so.2 (0x00007f7874a80000)
        liblber-2.4.so.2 => /usr/lib/x86_64-linux-gnu/liblber-2.4.so.2 (0x00007f7874860000)
        libldap_r-2.4.so.2 => /usr/lib/x86_64-linux-gnu/libldap_r-2.4.so.2 (0x00007f7874600000)
        libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007f78743d0000)
        libxcb-dri3.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-dri3.so.0 (0x00007f78741b0000)
        libxcb-present.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-present.so.0 (0x00007f7873fa0000)
        libxcb-sync.so.1 => /usr/lib/x86_64-linux-gnu/libxcb-sync.so.1 (0x00007f7873d90000)
        libxshmfence.so.1 => /usr/lib/x86_64-linux-gnu/libxshmfence.so.1 (0x00007f7873b70000)
        libglapi.so.0 => /usr/lib/x86_64-linux-gnu/libglapi.so.0 (0x00007f7873930000)
        libXext.so.6 => /usr/lib/x86_64-linux-gnu/libXext.so.6 (0x00007f7873710000)
        libXdamage.so.1 => /usr/lib/x86_64-linux-gnu/libXdamage.so.1 (0x00007f78734f0000)
        libXfixes.so.3 => /usr/lib/x86_64-linux-gnu/libXfixes.so.3 (0x00007f78732e0000)
        libX11-xcb.so.1 => /usr/lib/x86_64-linux-gnu/libX11-xcb.so.1 (0x00007f78730d0000)
        libX11.so.6 => /usr/lib/x86_64-linux-gnu/libX11.so.6 (0x00007f7872d80000)
        libxcb-glx.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-glx.so.0 (0x00007f7872b60000)
        libxcb-dri2.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-dri2.so.0 (0x00007f7872950000)
        libxcb.so.1 => /usr/lib/x86_64-linux-gnu/libxcb.so.1 (0x00007f7872710000)
        libXxf86vm.so.1 => /usr/lib/x86_64-linux-gnu/libXxf86vm.so.1 (0x00007f7872500000)
        libdrm.so.2 => /usr/lib/x86_64-linux-gnu/libdrm.so.2 (0x00007f78722e0000)
        /lib64/ld-linux-x86-64.so.2 (0x00007f7878200000)
        libhogweed.so.4 => /usr/lib/x86_64-linux-gnu/libhogweed.so.4 (0x00007f7872090000)
        libgmp.so.10 => /usr/lib/x86_64-linux-gnu/libgmp.so.10 (0x00007f7871e10000)
        libp11-kit.so.0 => /usr/lib/x86_64-linux-gnu/libp11-kit.so.0 (0x00007f7871b90000)
        libtasn1.so.6 => /usr/lib/x86_64-linux-gnu/libtasn1.so.6 (0x00007f7871970000)
        libkrb5.so.3 => /usr/lib/x86_64-linux-gnu/libkrb5.so.3 (0x00007f7871690000)
        libk5crypto.so.3 => /usr/lib/x86_64-linux-gnu/libk5crypto.so.3 (0x00007f7871450000)
        libcom_err.so.2 => /lib/x86_64-linux-gnu/libcom_err.so.2 (0x00007f7871240000)
        libkrb5support.so.0 => /usr/lib/x86_64-linux-gnu/libkrb5support.so.0 (0x00007f7871030000)
        libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2 (0x00007f7870e00000)
        libsasl2.so.2 => /usr/lib/x86_64-linux-gnu/libsasl2.so.2 (0x00007f7870be0000)
        libgssapi.so.3 => /usr/lib/x86_64-linux-gnu/libgssapi.so.3 (0x00007f7870990000)
        libXau.so.6 => /usr/lib/x86_64-linux-gnu/libXau.so.6 (0x00007f7870770000)
        libXdmcp.so.6 => /usr/lib/x86_64-linux-gnu/libXdmcp.so.6 (0x00007f7870560000)
        libffi.so.6 => /usr/lib/x86_64-linux-gnu/libffi.so.6 (0x00007f7870340000)
        libkeyutils.so.1 => /lib/x86_64-linux-gnu/libkeyutils.so.1 (0x00007f7870130000)
        libheimntlm.so.0 => /usr/lib/x86_64-linux-gnu/libheimntlm.so.0 (0x00007f786ff10000)
        libkrb5.so.26 => /usr/lib/x86_64-linux-gnu/libkrb5.so.26 (0x00007f786fc80000)
        libasn1.so.8 => /usr/lib/x86_64-linux-gnu/libasn1.so.8 (0x00007f786f9d0000)
        libhcrypto.so.4 => /usr/lib/x86_64-linux-gnu/libhcrypto.so.4 (0x00007f786f780000)
        libroken.so.18 => /usr/lib/x86_64-linux-gnu/libroken.so.18 (0x00007f786f560000)
        libwind.so.0 => /usr/lib/x86_64-linux-gnu/libwind.so.0 (0x00007f786f330000)
        libheimbase.so.1 => /usr/lib/x86_64-linux-gnu/libheimbase.so.1 (0x00007f786f110000)
        libhx509.so.5 => /usr/lib/x86_64-linux-gnu/libhx509.so.5 (0x00007f786eec0000)
        libsqlite3.so.0 => /usr/lib/x86_64-linux-gnu/libsqlite3.so.0 (0x00007f786ebe0000)
        libcrypt.so.1 => /lib/x86_64-linux-gnu/libcrypt.so.1 (0x00007f786e990000)

The other command produces the following output:

biom7@Biometrie7:~$ cat /etc/*release && uname -a
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=16.04
DISTRIB_CODENAME=xenial
DISTRIB_DESCRIPTION="Ubuntu 16.04.5 LTS"
NAME="Ubuntu"
VERSION="16.04.5 LTS (Xenial Xerus)"
ID=ubuntu
ID_LIKE=debian
PRETTY_NAME="Ubuntu 16.04.5 LTS"
VERSION_ID="16.04"
HOME_URL="http://www.ubuntu.com/"
SUPPORT_URL="http://help.ubuntu.com/"
BUG_REPORT_URL="http://bugs.launchpad.net/ubuntu/"
VERSION_CODENAME=xenial
UBUNTU_CODENAME=xenial
Linux Biometrie7 4.4.0-17134-Microsoft #648-Microsoft Tue Mar 05 18:57:00 PST 2019 x86_64 x86_64 x86_64 GNU/Linux

I am using the ubuntu subsystem of windows, mostly because VMs do weird things when a script tries to create symlinks in the host machine. However I also have a Ubuntu and a CentOS VM, so I can try and see what happens in those.

Thanks a lot for your help, I whish I could help more. I do not know if I will able to compile it (I have very little experience compiling things)

Kind regards, Ignacio

PD: to make sure there was nothing weird happening in the previous run I also tried on the centos VM, ntaining the following results:

[roformon1@localhost ~]$ bash ./testWasp.txt
ERROR: Could not find application "CompositePreprocessing"
ERROR: Module search path: /home/roformon1/Workspace/WASP/lib/otb/applications
ERROR: Available modules:
    BandMath
    BandMathX
    BinaryMorphologicalOperation
    BlockMatching
    BundleToPerfectSensor
    ClassificationMapRegularization
    ColorMapping
    CompareImages
    ComputeConfusionMatrix
    ComputeImagesStatistics
    ComputeModulusAndPhase
    ComputeOGRLayersFeaturesStatistics
    ComputePolylineFeatureFromImage
    ConcatenateImages
    ConcatenateVectorData
    ConnectedComponentSegmentation
    Convert
    ConvertCartoToGeoPoint
    ConvertSensorToGeoPoint
    DEMConvert
    DSFuzzyModelEstimation
    Despeckle
    DimensionalityReduction
    DisparityMapToElevationMap
    DomainTransform
    DownloadSRTMTiles
    EdgeExtraction
    ExtractROI
    FineRegistration
    FusionOfClassifications
    GeneratePlyFile
    GenerateRPCSensorModel
    GrayScaleMorphologicalOperation
    GridBasedImageResampling
    HaralickTextureExtraction
    HomologousPointsExtraction
    HooverCompareSegmentation
    HyperspectralUnmixing
    ImageClassifier
    ImageEnvelope
    KMeansClassification
    KmzExport
    LSMSSegmentation
    LSMSSmallRegionsMerging
    LSMSVectorization
    LargeScaleMeanShift
    LineSegmentDetection
    LocalStatisticExtraction
    ManageNoData
    MeanShiftSmoothing
    MorphologicalClassification
    MorphologicalMultiScaleDecomposition
    MorphologicalProfilesAnalysis
    MultiImageSamplingRate
    MultiResolutionPyramid
    MultivariateAlterationDetector
    OGRLayerClassifier
    OSMDownloader
    ObtainUTMZoneFromGeoPoint
    OpticalCalibration
    OrthoRectification
    Pansharpening
    PixelValue
    PolygonClassStatistics
    PredictRegression
    Quicklook
    RadiometricIndices
    Rasterization
    ReadImageInfo
    RefineSensorModel
    Rescale
    RigidTransformResample
    SARCalibration
    SARDeburst
    SARDecompositions
    SARPolarMatrixConvert
    SARPolarSynth
    SFSTextureExtraction
    SOMClassification
    SampleExtraction
    SampleSelection
    Segmentation
    Smoothing
    SplitImage
    StereoFramework
    StereoRectificationGridGenerator
    Superimpose
    TestApplication
    TileFusion
    TrainImagesClassifier
    TrainRegression
    TrainVectorClassifier
    VectorClassifier
    VectorDataDSValidation
    VectorDataExtractROI
    VectorDataReprojection
    VectorDataSetField
    VectorDataTransform
    VertexComponentAnalysis
[roformon1@localhost ~]$ nano testWasp.txt
[roformon1@localhost ~]$ bash ./testWasp.txt
    linux-vdso.so.1 =>  (0x00007ffdccb75000)
    libz.so.1 => /lib64/libz.so.1 (0x00007fc9c189f000)
    libgdal.so.20 => not found
    libOpenThreads.so.20 => not found
    libossim.so.1 => not found
    libgeotiff.so.2 => not found
    libtinyxml.so => not found
    libcurl.so => not found
    libkmlbase.so => not found
    libkmldom.so => not found
    libkmlengine.so => not found
    libOTBFuzzy-6.2.so.1 => not found
    libmuparser.so => not found
    libOTBMathParser-6.2.so.1 => not found
    libshark.so.0 => not found
    libboost_serialization.so.1.60.0 => not found
    libsvm.so => not found
    libopencv_core.so.2.4 => not found
    libopencv_ml.so.2.4 => not found
    libOTBSupervised-6.2.so.1 => not found
    libOTBSampling-6.2.so.1 => not found
    libotbsiftfast-6.2.so.1 => not found
    libOTBWavelet-6.2.so.1 => not found
    libOTBEdge-6.2.so.1 => not found
    libmuparserx.so.4.0.7 => not found
    libOTBMathParserX-6.2.so.1 => not found
    libOTBPolarimetry-6.2.so.1 => not found
    libOTBCommandLine-6.2.so.1 => not found
    libOTBCommandLineParser-6.2.so.1 => not found
    libGLU.so.1 => not found
    libGL.so.1 => /lib64/libGL.so.1 (0x00007fc9c1613000)
    libglfw.so.3 => not found
    libGLEW.so => not found
    libglut.so.3 => not found
    libOTBIceViewer-6.2.so.1 => not found
    libQtOpenGL.so.4 => not found
    libQtGui.so.4 => not found
    libQtCore.so.4 => not found
    libqwt.so.6 => not found
    libOTBMapla-6.2.so.1 => not found
    libOTBMonteverdi-6.2.so.1 => not found
    libOTBOpenThreadsAdapters-6.2.so.1 => not found
    libOTBRCC8-6.2.so.1 => not found
    libOTBSimulation-6.2.so.1 => not found
    libOTBTestKernel-6.2.so.1 => not found
    libMetadataHelper.so => not found
    libOTBMonteverdiGUI-6.2.so.1 => not found
    libOTBIce-6.2.so.1 => not found
    libOTBMonteverdiCore-6.2.so.1 => not found
    libOTBStatistics-6.2.so.1 => not found
    libOTBCarto-6.2.so.1 => not found
    libOTBQtWidget-6.2.so.1 => not found
    libOTBApplicationEngine-6.2.so.1 => not found
    libOTBVectorDataIO-6.2.so.1 => not found
    libOTBIOKML-6.2.so.1 => not found
    libOTBProjection-6.2.so.1 => not found
    libOTBQtAdapters-6.2.so.1 => not found
    libOTBOpticalCalibration-6.2.so.1 => not found
    libotb6S-6.2.so.1 => not found
    libOTBImageIO-6.2.so.1 => not found
    libOTBExtendedFilename-6.2.so.1 => not found
    libOTBIOBSQ-6.2.so.1 => not found
    libOTBIOLUM-6.2.so.1 => not found
    libOTBIOMSTAR-6.2.so.1 => not found
    libOTBIOONERA-6.2.so.1 => not found
    libOTBIORAD-6.2.so.1 => not found
    libOTBIOTileMap-6.2.so.1 => not found
    libOTBIOGDAL-6.2.so.1 => not found
    libOTBGdalAdapters-6.2.so.1 => not found
    libOTBVectorDataBase-6.2.so.1 => not found
    libOTBCurlAdapters-6.2.so.1 => not found
    libOTBImageManipulation-6.2.so.1 => not found
    libOTBStreaming-6.2.so.1 => not found
    libOTBImageBase-6.2.so.1 => not found
    libOTBMetadata-6.2.so.1 => not found
    libOTBTransform-6.2.so.1 => not found
    libOTBOSSIMAdapters-6.2.so.1 => not found
    libotbossimplugins-6.2.so.1 => not found
    libMuscateMetadata.so => not found
    libOTBCommon-6.2.so.1 => not found
    libITKQuadEdgeMesh-4.12.so.1 => not found
    libITKMetaIO-4.12.so.1 => not found
    libITKLabelMap-4.12.so.1 => not found
    libITKIOImageBase-4.12.so.1 => not found
    libITKBiasCorrection-4.12.so.1 => not found
    libITKPolynomials-4.12.so.1 => not found
    libITKFFT-4.12.so.1 => not found
    libfftw3.so.3 => /lib64/libfftw3.so.3 (0x00007fc9c128e000)
    libfftw3_threads.so.3 => /lib64/libfftw3_threads.so.3 (0x00007fc9c1087000)
    libfftw3f.so.3 => not found
    libfftw3f_threads.so.3 => not found
    libITKOptimizersv4-4.12.so.1 => not found
    libITKOptimizers-4.12.so.1 => not found
    libITKKLMRegionGrowing-4.12.so.1 => not found
    libITKWatersheds-4.12.so.1 => not found
    libITKStatistics-4.12.so.1 => not found
    libitkNetlibSlatec-4.12.so.1 => not found
    libITKSpatialObjects-4.12.so.1 => not found
    libITKMesh-4.12.so.1 => not found
    libITKTransform-4.12.so.1 => not found
    libITKPath-4.12.so.1 => not found
    libITKCommon-4.12.so.1 => not found
    libitksys-4.12.so.1 => not found
    libITKVNLInstantiation-4.12.so.1 => not found
    libitkvnl_algo-4.12.so.1 => not found
    libitkvnl-4.12.so.1 => not found
    libitkv3p_netlib-4.12.so.1 => not found
    libitknetlib-4.12.so.1 => not found
    libitkvcl-4.12.so.1 => not found
    libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fc9c0e6b000)
    libm.so.6 => /lib64/libm.so.6 (0x00007fc9c0b69000)
    libdl.so.2 => /lib64/libdl.so.2 (0x00007fc9c0965000)
    libboost_unit_test_framework.so.1.60.0 => not found
    libboost_filesystem.so.1.60.0 => not found
    libboost_system.so.1.60.0 => not found
    libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007fc9c065e000)
    libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007fc9c0448000)
    libc.so.6 => /lib64/libc.so.6 (0x00007fc9c007b000)
    libGLX.so.0 => /lib64/libGLX.so.0 (0x00007fc9bfe49000)
    libX11.so.6 => /lib64/libX11.so.6 (0x00007fc9bfb0b000)
    libXext.so.6 => /lib64/libXext.so.6 (0x00007fc9bf8f9000)
    libGLdispatch.so.0 => /lib64/libGLdispatch.so.0 (0x00007fc9bf643000)
    /lib64/ld-linux-x86-64.so.2 (0x00007fc9c1e09000)
    libxcb.so.1 => /lib64/libxcb.so.1 (0x00007fc9bf41b000)
    libXau.so.6 => /lib64/libXau.so.6 (0x00007fc9bf217000)
    linux-vdso.so.1 =>  (0x00007ffda2fb1000)
    libz.so.1 => /lib64/libz.so.1 (0x00007f61733cb000)
    libgdal.so.20 => not found
    libOpenThreads.so.20 => not found
    libossim.so.1 => not found
    libgeotiff.so.2 => not found
    libtinyxml.so => not found
    libcurl.so => not found
    libkmlbase.so => not found
    libkmldom.so => not found
    libkmlengine.so => not found
    libOTBFuzzy-6.2.so.1 => not found
    libmuparser.so => not found
    libOTBMathParser-6.2.so.1 => not found
    libshark.so.0 => not found
    libboost_serialization.so.1.60.0 => not found
    libsvm.so => not found
    libopencv_core.so.2.4 => not found
    libopencv_ml.so.2.4 => not found
    libOTBSupervised-6.2.so.1 => not found
    libOTBSampling-6.2.so.1 => not found
    libotbsiftfast-6.2.so.1 => not found
    libOTBWavelet-6.2.so.1 => not found
    libOTBEdge-6.2.so.1 => not found
    libmuparserx.so.4.0.7 => not found
    libOTBMathParserX-6.2.so.1 => not found
    libOTBPolarimetry-6.2.so.1 => not found
    libOTBCommandLine-6.2.so.1 => not found
    libOTBCommandLineParser-6.2.so.1 => not found
    libGLU.so.1 => not found
    libGL.so.1 => /lib64/libGL.so.1 (0x00007f617313f000)
    libglfw.so.3 => not found
    libGLEW.so => not found
    libglut.so.3 => not found
    libOTBIceViewer-6.2.so.1 => not found
    libQtOpenGL.so.4 => not found
    libQtGui.so.4 => not found
    libQtCore.so.4 => not found
    libqwt.so.6 => not found
    libOTBMapla-6.2.so.1 => not found
    libOTBMonteverdi-6.2.so.1 => not found
    libOTBOpenThreadsAdapters-6.2.so.1 => not found
    libOTBRCC8-6.2.so.1 => not found
    libOTBSimulation-6.2.so.1 => not found
    libOTBTestKernel-6.2.so.1 => not found
    libMetadataHelper.so => not found
    libOTBMonteverdiGUI-6.2.so.1 => not found
    libOTBIce-6.2.so.1 => not found
    libOTBMonteverdiCore-6.2.so.1 => not found
    libOTBStatistics-6.2.so.1 => not found
    libOTBCarto-6.2.so.1 => not found
    libOTBQtWidget-6.2.so.1 => not found
    libOTBApplicationEngine-6.2.so.1 => not found
    libOTBVectorDataIO-6.2.so.1 => not found
    libOTBIOKML-6.2.so.1 => not found
    libOTBProjection-6.2.so.1 => not found
    libOTBQtAdapters-6.2.so.1 => not found
    libOTBOpticalCalibration-6.2.so.1 => not found
    libotb6S-6.2.so.1 => not found
    libOTBImageIO-6.2.so.1 => not found
    libOTBExtendedFilename-6.2.so.1 => not found
    libOTBIOBSQ-6.2.so.1 => not found
    libOTBIOLUM-6.2.so.1 => not found
    libOTBIOMSTAR-6.2.so.1 => not found
    libOTBIOONERA-6.2.so.1 => not found
    libOTBIORAD-6.2.so.1 => not found
    libOTBIOTileMap-6.2.so.1 => not found
    libOTBIOGDAL-6.2.so.1 => not found
    libOTBGdalAdapters-6.2.so.1 => not found
    libOTBVectorDataBase-6.2.so.1 => not found
    libOTBCurlAdapters-6.2.so.1 => not found
    libOTBImageManipulation-6.2.so.1 => not found
    libOTBStreaming-6.2.so.1 => not found
    libOTBImageBase-6.2.so.1 => not found
    libOTBMetadata-6.2.so.1 => not found
    libOTBTransform-6.2.so.1 => not found
    libOTBOSSIMAdapters-6.2.so.1 => not found
    libotbossimplugins-6.2.so.1 => not found
    libMuscateMetadata.so => not found
    libOTBCommon-6.2.so.1 => not found
    libITKQuadEdgeMesh-4.12.so.1 => not found
    libITKMetaIO-4.12.so.1 => not found
    libITKLabelMap-4.12.so.1 => not found
    libITKIOImageBase-4.12.so.1 => not found
    libITKBiasCorrection-4.12.so.1 => not found
    libITKPolynomials-4.12.so.1 => not found
    libITKFFT-4.12.so.1 => not found
    libfftw3.so.3 => /lib64/libfftw3.so.3 (0x00007f6172dba000)
    libfftw3_threads.so.3 => /lib64/libfftw3_threads.so.3 (0x00007f6172bb3000)
    libfftw3f.so.3 => not found
    libfftw3f_threads.so.3 => not found
    libITKOptimizersv4-4.12.so.1 => not found
    libITKOptimizers-4.12.so.1 => not found
    libITKKLMRegionGrowing-4.12.so.1 => not found
    libITKWatersheds-4.12.so.1 => not found
    libITKStatistics-4.12.so.1 => not found
    libitkNetlibSlatec-4.12.so.1 => not found
    libITKSpatialObjects-4.12.so.1 => not found
    libITKMesh-4.12.so.1 => not found
    libITKTransform-4.12.so.1 => not found
    libITKPath-4.12.so.1 => not found
    libITKCommon-4.12.so.1 => not found
    libitksys-4.12.so.1 => not found
    libITKVNLInstantiation-4.12.so.1 => not found
    libitkvnl_algo-4.12.so.1 => not found
    libitkvnl-4.12.so.1 => not found
    libitkv3p_netlib-4.12.so.1 => not found
    libitknetlib-4.12.so.1 => not found
    libitkvcl-4.12.so.1 => not found
    libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f6172997000)
    libm.so.6 => /lib64/libm.so.6 (0x00007f6172695000)
    libdl.so.2 => /lib64/libdl.so.2 (0x00007f6172491000)
    libboost_unit_test_framework.so.1.60.0 => not found
    libboost_filesystem.so.1.60.0 => not found
    libboost_system.so.1.60.0 => not found
    libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007f617218a000)
    libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f6171f74000)
    libc.so.6 => /lib64/libc.so.6 (0x00007f6171ba7000)
    libGLX.so.0 => /lib64/libGLX.so.0 (0x00007f6171975000)
    libX11.so.6 => /lib64/libX11.so.6 (0x00007f6171637000)
    libXext.so.6 => /lib64/libXext.so.6 (0x00007f6171425000)
    libGLdispatch.so.0 => /lib64/libGLdispatch.so.0 (0x00007f617116f000)
    /lib64/ld-linux-x86-64.so.2 (0x00007f6173935000)
    libxcb.so.1 => /lib64/libxcb.so.1 (0x00007f6170f47000)
    libXau.so.6 => /lib64/libXau.so.6 (0x00007f6170d43000)
[roformon1@localhost ~]$ cat /etc/*release && uname -a
CentOS Linux release 7.6.1810 (Core) 
NAME="CentOS Linux"
VERSION="7 (Core)"
ID="centos"
ID_LIKE="rhel fedora"
VERSION_ID="7"
PRETTY_NAME="CentOS Linux 7 (Core)"
ANSI_COLOR="0;31"
CPE_NAME="cpe:/o:centos:centos:7"
HOME_URL="https://www.centos.org/"
BUG_REPORT_URL="https://bugs.centos.org/"

CENTOS_MANTISBT_PROJECT="CentOS-7"
CENTOS_MANTISBT_PROJECT_VERSION="7"
REDHAT_SUPPORT_PRODUCT="centos"
REDHAT_SUPPORT_PRODUCT_VERSION="7"

CentOS Linux release 7.6.1810 (Core) 
CentOS Linux release 7.6.1810 (Core) 
Linux localhost.localdomain 3.10.0-957.5.1.el7.x86_64 #1 SMP Fri Feb 1 14:54:57 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
petket-5 commented 5 years ago

Thanks again for the info. I forgot to specify that the ldd commands should be called after the export block.

EDIT And the path should be now appended and not reset, so all in all the script will be:

#!/bin/bash

YOUR_WASP_INSTALL_PATH=/home/biom7/WASP

export PATH=$YOUR_WASP_INSTALL_PATH/bin:$PATH
export OTB_APPLICATION_PATH=$YOUR_WASP_INSTALL_PATH/lib/otb/applications
export LD_LIBRARY_PATH=$YOUR_WASP_INSTALL_PATH/lib

# $YOUR_WASP_INSTALL_PATH/bin/otbApplicationLauncherCommandLine CompositePreprocessing -help

ldd $YOUR_WASP_INSTALL_PATH/lib/otbapp_CompositePreprocessing.so
ldd $YOUR_WASP_INSTALL_PATH/lib/otb/applications/otbapp_CompositePreprocessing.so

Kind regards, Peter

borlafgis commented 5 years ago

Hello

Sorry for the dumb mistake. I made the changes and re-ran:

biom7@Biometrie7:~$ cat testWasp.sh
#!/bin/bash

YOUR_WASP_INSTALL_PATH=/home/biom7/WASP

export PATH=$YOUR_WASP_INSTALL_PATH/bin:$PATH
export OTB_APPLICATION_PATH=$YOUR_WASP_INSTALL_PATH/lib/otb/applications
export LD_LIBRARY_PATH=$YOUR_WASP_INSTALL_PATH/lib

# $YOUR_WASP_INSTALL_PATH/bin/otbApplicationLauncherCommandLine CompositePreprocessing -help

ldd $YOUR_WASP_INSTALL_PATH/lib/otbapp_CompositePreprocessing.so
ldd $YOUR_WASP_INSTALL_PATH/lib/otb/applications/otbapp_CompositePreprocessing.so
biom7@Biometrie7:~$ bash testWasp.sh
        linux-vdso.so.1 =>  (0x00007ffff9b64000)
        libz.so.1 => /home/biom7/WASP/lib/libz.so.1 (0x00007f7d2ce90000)
        libgdal.so.20 => /home/biom7/WASP/lib/libgdal.so.20 (0x00007f7d2bc96000)
        libOpenThreads.so.20 => /home/biom7/WASP/lib/libOpenThreads.so.20 (0x00007f7d2ba80000)
        libossim.so.1 => /home/biom7/WASP/lib/libossim.so.1 (0x00007f7d2a7c0000)
        libgeotiff.so.2 => /home/biom7/WASP/lib/libgeotiff.so.2 (0x00007f7d2a580000)
        libtinyxml.so => /home/biom7/WASP/lib/libtinyxml.so (0x00007f7d2a350000)
        libcurl.so => /home/biom7/WASP/lib/libcurl.so (0x00007f7d2a0d0000)
        libkmlbase.so => /home/biom7/WASP/lib/libkmlbase.so (0x00007f7d29ea0000)
        libkmldom.so => /home/biom7/WASP/lib/libkmldom.so (0x00007f7d29be0000)
        libkmlengine.so => /home/biom7/WASP/lib/libkmlengine.so (0x00007f7d29990000)
        libOTBFuzzy-6.2.so.1 => /home/biom7/WASP/lib/libOTBFuzzy-6.2.so.1 (0x00007f7d29780000)
        libmuparser.so => /home/biom7/WASP/lib/libmuparser.so (0x00007f7d29510000)
        libOTBMathParser-6.2.so.1 => /home/biom7/WASP/lib/libOTBMathParser-6.2.so.1 (0x00007f7d292f0000)
        libshark.so.0 => /home/biom7/WASP/lib/libshark.so.0 (0x00007f7d28e70000)
        libboost_serialization.so.1.60.0 => /home/biom7/WASP/lib/libboost_serialization.so.1.60.0 (0x00007f7d28c30000)
        libsvm.so => /home/biom7/WASP/lib/libsvm.so (0x00007f7d28a00000)
        libopencv_core.so.2.4 => /home/biom7/WASP/lib/libopencv_core.so.2.4 (0x00007f7d28530000)
        libopencv_ml.so.2.4 => /home/biom7/WASP/lib/libopencv_ml.so.2.4 (0x00007f7d282a0000)
        libOTBSupervised-6.2.so.1 => /home/biom7/WASP/lib/libOTBSupervised-6.2.so.1 (0x00007f7d28080000)
        libOTBSampling-6.2.so.1 => /home/biom7/WASP/lib/libOTBSampling-6.2.so.1 (0x00007f7d27e60000)
        libotbsiftfast-6.2.so.1 => /home/biom7/WASP/lib/libotbsiftfast-6.2.so.1 (0x00007f7d27c50000)
        libOTBWavelet-6.2.so.1 => /home/biom7/WASP/lib/libOTBWavelet-6.2.so.1 (0x00007f7d27a30000)
        libOTBEdge-6.2.so.1 => /home/biom7/WASP/lib/libOTBEdge-6.2.so.1 (0x00007f7d277f0000)
        libmuparserx.so.4.0.7 => /home/biom7/WASP/lib/libmuparserx.so.4.0.7 (0x00007f7d27520000)
        libOTBMathParserX-6.2.so.1 => /home/biom7/WASP/lib/libOTBMathParserX-6.2.so.1 (0x00007f7d272e0000)
        libOTBPolarimetry-6.2.so.1 => /home/biom7/WASP/lib/libOTBPolarimetry-6.2.so.1 (0x00007f7d270d0000)
        libOTBCommandLine-6.2.so.1 => /home/biom7/WASP/lib/libOTBCommandLine-6.2.so.1 (0x00007f7d26eb0000)
        libOTBCommandLineParser-6.2.so.1 => /home/biom7/WASP/lib/libOTBCommandLineParser-6.2.so.1 (0x00007f7d26c80000)
        libGLU.so.1 => not found
        libGL.so.1 => /usr/lib/x86_64-linux-gnu/mesa/libGL.so.1 (0x00007f7d269f0000)
        libglfw.so.3 => /home/biom7/WASP/lib/libglfw.so.3 (0x00007f7d267c0000)
        libGLEW.so => /home/biom7/WASP/lib/libGLEW.so (0x00007f7d26530000)
        libglut.so.3 => /home/biom7/WASP/lib/libglut.so.3 (0x00007f7d262e0000)
        libOTBIceViewer-6.2.so.1 => /home/biom7/WASP/lib/libOTBIceViewer-6.2.so.1 (0x00007f7d260b0000)
        libQtOpenGL.so.4 => /home/biom7/WASP/lib/libQtOpenGL.so.4 (0x00007f7d25db0000)
        libQtGui.so.4 => /home/biom7/WASP/lib/libQtGui.so.4 (0x00007f7d25120000)
        libQtCore.so.4 => /home/biom7/WASP/lib/libQtCore.so.4 (0x00007f7d24c20000)
        libqwt.so.6 => /home/biom7/WASP/lib/libqwt.so.6 (0x00007f7d248e0000)
        libOTBMapla-6.2.so.1 => /home/biom7/WASP/lib/libOTBMapla-6.2.so.1 (0x00007f7d246d0000)
        libOTBMonteverdi-6.2.so.1 => /home/biom7/WASP/lib/libOTBMonteverdi-6.2.so.1 (0x00007f7d24490000)
        libOTBOpenThreadsAdapters-6.2.so.1 => /home/biom7/WASP/lib/libOTBOpenThreadsAdapters-6.2.so.1 (0x00007f7d24280000)
        libOTBRCC8-6.2.so.1 => /home/biom7/WASP/lib/libOTBRCC8-6.2.so.1 (0x00007f7d24070000)
        libOTBSimulation-6.2.so.1 => /home/biom7/WASP/lib/libOTBSimulation-6.2.so.1 (0x00007f7d23e00000)
        libOTBTestKernel-6.2.so.1 => /home/biom7/WASP/lib/libOTBTestKernel-6.2.so.1 (0x00007f7d23b10000)
        libMetadataHelper.so => /home/biom7/WASP/lib/libMetadataHelper.so (0x00007f7d238e0000)
        libOTBMonteverdiGUI-6.2.so.1 => /home/biom7/WASP/lib/libOTBMonteverdiGUI-6.2.so.1 (0x00007f7d235f0000)
        libOTBIce-6.2.so.1 => /home/biom7/WASP/lib/libOTBIce-6.2.so.1 (0x00007f7d23300000)
        libOTBMonteverdiCore-6.2.so.1 => /home/biom7/WASP/lib/libOTBMonteverdiCore-6.2.so.1 (0x00007f7d23030000)
        libOTBStatistics-6.2.so.1 => /home/biom7/WASP/lib/libOTBStatistics-6.2.so.1 (0x00007f7d22e10000)
        libOTBCarto-6.2.so.1 => /home/biom7/WASP/lib/libOTBCarto-6.2.so.1 (0x00007f7d22be0000)
        libOTBQtWidget-6.2.so.1 => /home/biom7/WASP/lib/libOTBQtWidget-6.2.so.1 (0x00007f7d22960000)
        libOTBApplicationEngine-6.2.so.1 => /home/biom7/WASP/lib/libOTBApplicationEngine-6.2.so.1 (0x00007f7d21eb0000)
        libOTBVectorDataIO-6.2.so.1 => /home/biom7/WASP/lib/libOTBVectorDataIO-6.2.so.1 (0x00007f7d21ca0000)
        libOTBIOKML-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOKML-6.2.so.1 (0x00007f7d21a40000)
        libOTBProjection-6.2.so.1 => /home/biom7/WASP/lib/libOTBProjection-6.2.so.1 (0x00007f7d21800000)
        libOTBQtAdapters-6.2.so.1 => /home/biom7/WASP/lib/libOTBQtAdapters-6.2.so.1 (0x00007f7d215f0000)
        libOTBOpticalCalibration-6.2.so.1 => /home/biom7/WASP/lib/libOTBOpticalCalibration-6.2.so.1 (0x00007f7d213b0000)
        libotb6S-6.2.so.1 => /home/biom7/WASP/lib/libotb6S-6.2.so.1 (0x00007f7d20de0000)
        libOTBImageIO-6.2.so.1 => /home/biom7/WASP/lib/libOTBImageIO-6.2.so.1 (0x00007f7d20bd0000)
        libOTBExtendedFilename-6.2.so.1 => /home/biom7/WASP/lib/libOTBExtendedFilename-6.2.so.1 (0x00007f7d209a0000)
        libOTBIOBSQ-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOBSQ-6.2.so.1 (0x00007f7d20770000)
        libOTBIOLUM-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOLUM-6.2.so.1 (0x00007f7d20550000)
        libOTBIOMSTAR-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOMSTAR-6.2.so.1 (0x00007f7d20340000)
        libOTBIOONERA-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOONERA-6.2.so.1 (0x00007f7d20110000)
        libOTBIORAD-6.2.so.1 => /home/biom7/WASP/lib/libOTBIORAD-6.2.so.1 (0x00007f7d1fef0000)
        libOTBIOTileMap-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOTileMap-6.2.so.1 (0x00007f7d1fcd0000)
        libOTBIOGDAL-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOGDAL-6.2.so.1 (0x00007f7d1fa70000)
        libOTBGdalAdapters-6.2.so.1 => /home/biom7/WASP/lib/libOTBGdalAdapters-6.2.so.1 (0x00007f7d1f840000)
        libOTBVectorDataBase-6.2.so.1 => /home/biom7/WASP/lib/libOTBVectorDataBase-6.2.so.1 (0x00007f7d1f630000)
        libOTBCurlAdapters-6.2.so.1 => /home/biom7/WASP/lib/libOTBCurlAdapters-6.2.so.1 (0x00007f7d1f410000)
        libOTBImageManipulation-6.2.so.1 => /home/biom7/WASP/lib/libOTBImageManipulation-6.2.so.1 (0x00007f7d1f200000)
        libOTBStreaming-6.2.so.1 => /home/biom7/WASP/lib/libOTBStreaming-6.2.so.1 (0x00007f7d1eff0000)
        libOTBImageBase-6.2.so.1 => /home/biom7/WASP/lib/libOTBImageBase-6.2.so.1 (0x00007f7d1edc0000)
        libOTBMetadata-6.2.so.1 => /home/biom7/WASP/lib/libOTBMetadata-6.2.so.1 (0x00007f7d1eaf0000)
        libOTBTransform-6.2.so.1 => /home/biom7/WASP/lib/libOTBTransform-6.2.so.1 (0x00007f7d1e8e0000)
        libOTBOSSIMAdapters-6.2.so.1 => /home/biom7/WASP/lib/libOTBOSSIMAdapters-6.2.so.1 (0x00007f7d1e6a0000)
        libotbossimplugins-6.2.so.1 => /home/biom7/WASP/lib/libotbossimplugins-6.2.so.1 (0x00007f7d1e290000)
        libMuscateMetadata.so => /home/biom7/WASP/lib/libMuscateMetadata.so (0x00007f7d1e050000)
        libOTBCommon-6.2.so.1 => /home/biom7/WASP/lib/libOTBCommon-6.2.so.1 (0x00007f7d1de20000)
        libITKQuadEdgeMesh-4.12.so.1 => /home/biom7/WASP/lib/libITKQuadEdgeMesh-4.12.so.1 (0x00007f7d2d417000)
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        libMuscateMetadata.so => /home/biom7/WASP/lib/libMuscateMetadata.so (0x00007f62c9b50000)
        libOTBCommon-6.2.so.1 => /home/biom7/WASP/lib/libOTBCommon-6.2.so.1 (0x00007f62c9920000)
        libITKQuadEdgeMesh-4.12.so.1 => /home/biom7/WASP/lib/libITKQuadEdgeMesh-4.12.so.1 (0x00007f62d8f17000)
        libITKMetaIO-4.12.so.1 => /home/biom7/WASP/lib/libITKMetaIO-4.12.so.1 (0x00007f62c9872000)
        libITKLabelMap-4.12.so.1 => /home/biom7/WASP/lib/libITKLabelMap-4.12.so.1 (0x00007f62d8bbc000)
        libITKIOImageBase-4.12.so.1 => /home/biom7/WASP/lib/libITKIOImageBase-4.12.so.1 (0x00007f62c9847000)
        libITKBiasCorrection-4.12.so.1 => /home/biom7/WASP/lib/libITKBiasCorrection-4.12.so.1 (0x00007f62d8bb7000)
        libITKPolynomials-4.12.so.1 => /home/biom7/WASP/lib/libITKPolynomials-4.12.so.1 (0x00007f62d7789000)
        libITKFFT-4.12.so.1 => /home/biom7/WASP/lib/libITKFFT-4.12.so.1 (0x00007f62d5e41000)
        libfftw3.so.3 => /home/biom7/WASP/lib/libfftw3.so.3 (0x00007f62c9530000)
        libfftw3_threads.so.3 => /home/biom7/WASP/lib/libfftw3_threads.so.3 (0x00007f62c9310000)
        libfftw3f.so.3 => /home/biom7/WASP/lib/libfftw3f.so.3 (0x00007f62c9010000)
        libfftw3f_threads.so.3 => /home/biom7/WASP/lib/libfftw3f_threads.so.3 (0x00007f62c8e00000)
        libITKOptimizersv4-4.12.so.1 => /home/biom7/WASP/lib/libITKOptimizersv4-4.12.so.1 (0x00007f62c8dcc000)
        libITKOptimizers-4.12.so.1 => /home/biom7/WASP/lib/libITKOptimizers-4.12.so.1 (0x00007f62c8d69000)
        libITKKLMRegionGrowing-4.12.so.1 => /home/biom7/WASP/lib/libITKKLMRegionGrowing-4.12.so.1 (0x00007f62d56d1000)
        libITKWatersheds-4.12.so.1 => /home/biom7/WASP/lib/libITKWatersheds-4.12.so.1 (0x00007f62d62b8000)
        libITKStatistics-4.12.so.1 => /home/biom7/WASP/lib/libITKStatistics-4.12.so.1 (0x00007f62c8d46000)
        libitkNetlibSlatec-4.12.so.1 => /home/biom7/WASP/lib/libitkNetlibSlatec-4.12.so.1 (0x00007f62d6079000)
        libITKSpatialObjects-4.12.so.1 => /home/biom7/WASP/lib/libITKSpatialObjects-4.12.so.1 (0x00007f62c8cf2000)
        libITKMesh-4.12.so.1 => /home/biom7/WASP/lib/libITKMesh-4.12.so.1 (0x00007f62d8bb1000)
        libITKTransform-4.12.so.1 => /home/biom7/WASP/lib/libITKTransform-4.12.so.1 (0x00007f62d8bab000)
        libITKPath-4.12.so.1 => /home/biom7/WASP/lib/libITKPath-4.12.so.1 (0x00007f62c8ce0000)
        libITKCommon-4.12.so.1 => /home/biom7/WASP/lib/libITKCommon-4.12.so.1 (0x00007f62c8bc5000)
        libitksys-4.12.so.1 => /home/biom7/WASP/lib/libitksys-4.12.so.1 (0x00007f62c8b66000)
        libITKVNLInstantiation-4.12.so.1 => /home/biom7/WASP/lib/libITKVNLInstantiation-4.12.so.1 (0x00007f62c8adc000)
        libitkvnl_algo-4.12.so.1 => /home/biom7/WASP/lib/libitkvnl_algo-4.12.so.1 (0x00007f62c8a6c000)
        libitkvnl-4.12.so.1 => /home/biom7/WASP/lib/libitkvnl-4.12.so.1 (0x00007f62c85c5000)
        libitkv3p_netlib-4.12.so.1 => /home/biom7/WASP/lib/libitkv3p_netlib-4.12.so.1 (0x00007f62c84b8000)
        libitknetlib-4.12.so.1 => /home/biom7/WASP/lib/libitknetlib-4.12.so.1 (0x00007f62c8493000)
        libitkvcl-4.12.so.1 => /home/biom7/WASP/lib/libitkvcl-4.12.so.1 (0x00007f62d7792000)
        libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f62c8270000)
        libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f62c7f60000)
        libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f62c7d50000)
        libboost_unit_test_framework.so.1.60.0 => /home/biom7/WASP/lib/libboost_unit_test_framework.so.1.60.0 (0x00007f62c7a80000)
        libboost_filesystem.so.1.60.0 => /home/biom7/WASP/lib/libboost_filesystem.so.1.60.0 (0x00007f62c7850000)
        libboost_system.so.1.60.0 => /home/biom7/WASP/lib/libboost_system.so.1.60.0 (0x00007f62c7640000)
        libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f62c72a0000)
        libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f62c7080000)
        libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f62c6cb0000)
        libgeos_c.so.1 => /home/biom7/WASP/lib/libgeos_c.so.1 (0x00007f62c6a60000)
        libsqlite3.so => /home/biom7/WASP/lib/libsqlite3.so (0x00007f62c6780000)
        libexpat.so => /home/biom7/WASP/lib/libexpat.so (0x00007f62c6540000)
        libopenjp2.so.7 => /home/biom7/WASP/lib/libopenjp2.so.7 (0x00007f62c62d0000)
        libnetcdf.so.11 => /home/biom7/WASP/lib/libnetcdf.so.11 (0x00007f62c2f40000)
        libhdf5_hl.so.100.1.0 => /home/biom7/WASP/lib/libhdf5_hl.so.100.1.0 (0x00007f62c2d10000)
        libhdf5.so.100.1.0 => /home/biom7/WASP/lib/libhdf5.so.100.1.0 (0x00007f62c2730000)
        libmfhdfalt.so.4.2.13 => /home/biom7/WASP/lib/libmfhdfalt.so.4.2.13 (0x00007f62c2500000)
        libdfalt.so.4.2.13 => /home/biom7/WASP/lib/libdfalt.so.4.2.13 (0x00007f62c2240000)
        libjpeg.so.62 => /home/biom7/WASP/lib/libjpeg.so.62 (0x00007f62c1fc0000)
        libtiff.so.5 => /home/biom7/WASP/lib/libtiff.so.5 (0x00007f62c1d40000)
        libpng.so.1 => /home/biom7/WASP/lib/libpng.so.1 (0x00007f62c1af0000)
        librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007f62c18d0000)
        /lib64/ld-linux-x86-64.so.2 (0x00007f62d9000000)
        libgeos.so.3.6.1 => /home/biom7/WASP/lib/libgeos.so.3.6.1 (0x00007f62c1510000)
        libfreetype.so => /home/biom7/WASP/lib/libfreetype.so (0x00007f62c1250000)
        libproj.so.12 => /home/biom7/WASP/lib/libproj.so.12 (0x00007f62c0fd0000)
        libssl.so.1.0.0 => /home/biom7/WASP/lib/libssl.so.1.0.0 (0x00007f62c0d50000)
        libcrypto.so.1.0.0 => /home/biom7/WASP/lib/libcrypto.so.1.0.0 (0x00007f62c0960000)
        libminizip.so => /home/biom7/WASP/lib/libminizip.so (0x00007f62c0750000)
        liburiparser.so => /home/biom7/WASP/lib/liburiparser.so (0x00007f62c0520000)
        libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007f62c02c0000)
        libxcb-dri3.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-dri3.so.0 (0x00007f62c00b0000)
        libxcb-present.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-present.so.0 (0x00007f62bfea0000)
        libxcb-sync.so.1 => /usr/lib/x86_64-linux-gnu/libxcb-sync.so.1 (0x00007f62bfc80000)
        libxshmfence.so.1 => /usr/lib/x86_64-linux-gnu/libxshmfence.so.1 (0x00007f62bfa70000)
        libglapi.so.0 => /usr/lib/x86_64-linux-gnu/libglapi.so.0 (0x00007f62bf830000)
        libXext.so.6 => /usr/lib/x86_64-linux-gnu/libXext.so.6 (0x00007f62bf600000)
        libXdamage.so.1 => /usr/lib/x86_64-linux-gnu/libXdamage.so.1 (0x00007f62bf3f0000)
        libXfixes.so.3 => /usr/lib/x86_64-linux-gnu/libXfixes.so.3 (0x00007f62bf1e0000)
        libX11-xcb.so.1 => /usr/lib/x86_64-linux-gnu/libX11-xcb.so.1 (0x00007f62befc0000)
        libX11.so.6 => /usr/lib/x86_64-linux-gnu/libX11.so.6 (0x00007f62bec80000)
        libxcb-glx.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-glx.so.0 (0x00007f62bea60000)
        libxcb-dri2.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-dri2.so.0 (0x00007f62be840000)
        libxcb.so.1 => /usr/lib/x86_64-linux-gnu/libxcb.so.1 (0x00007f62be610000)
        libXxf86vm.so.1 => /usr/lib/x86_64-linux-gnu/libXxf86vm.so.1 (0x00007f62be400000)
        libdrm.so.2 => /usr/lib/x86_64-linux-gnu/libdrm.so.2 (0x00007f62be1d0000)
        libXrandr.so.2 => /usr/lib/x86_64-linux-gnu/libXrandr.so.2 (0x00007f62bdfc0000)
        libXinerama.so.1 => /usr/lib/x86_64-linux-gnu/libXinerama.so.1 (0x00007f62bdda0000)
        libXi.so.6 => /usr/lib/x86_64-linux-gnu/libXi.so.6 (0x00007f62bdb90000)
        libXcursor.so.1 => /usr/lib/x86_64-linux-gnu/libXcursor.so.1 (0x00007f62bd980000)
        libGLU.so.1 => not found
        libGLU.so.1 => not found
        libXrender.so.1 => /usr/lib/x86_64-linux-gnu/libXrender.so.1 (0x00007f62bd750000)
        libGLU.so.1 => not found
        libGLU.so.1 => not found
        libGLU.so.1 => not found
        libGLU.so.1 => not found
        libitkdouble-conversion-4.12.so.1 => /home/biom7/WASP/lib/libitkdouble-conversion-4.12.so.1 (0x00007f62d5002000)
        libboost_timer.so.1.60.0 => /home/biom7/WASP/lib/libboost_timer.so.1.60.0 (0x00007f62bd470000)
        libXau.so.6 => /usr/lib/x86_64-linux-gnu/libXau.so.6 (0x00007f62bd250000)
        libXdmcp.so.6 => /usr/lib/x86_64-linux-gnu/libXdmcp.so.6 (0x00007f62bd040000)
        libboost_chrono.so.1.60.0 => /home/biom7/WASP/lib/libboost_chrono.so.1.60.0 (0x00007f62bce20000)

Kind regards, Ignacio

petket-5 commented 5 years ago

Now this is finally a trace. You seem to be missing libGLU which is required by that app.

Please run yum install mesa-libGLU-devel.x86_64 and run WASP again.

EDIT And the script containing the ldd-commands as well :)

Peter

borlafgis commented 5 years ago

Hello

Running the script after the installation (sudo apt-get install libglu1-mesa-dev) produces the following output:

biom7@Biometrie7:~$ bash testWasp.sh
        linux-vdso.so.1 =>  (0x00007ffff2dfc000)
        libz.so.1 => /home/biom7/WASP/lib/libz.so.1 (0x00007f9637b30000)
        libgdal.so.20 => /home/biom7/WASP/lib/libgdal.so.20 (0x00007f9636936000)
        libOpenThreads.so.20 => /home/biom7/WASP/lib/libOpenThreads.so.20 (0x00007f9636720000)
        libossim.so.1 => /home/biom7/WASP/lib/libossim.so.1 (0x00007f9635460000)
        libgeotiff.so.2 => /home/biom7/WASP/lib/libgeotiff.so.2 (0x00007f9635220000)
        libtinyxml.so => /home/biom7/WASP/lib/libtinyxml.so (0x00007f9634ff0000)
        libcurl.so => /home/biom7/WASP/lib/libcurl.so (0x00007f9634d70000)
        libkmlbase.so => /home/biom7/WASP/lib/libkmlbase.so (0x00007f9634b40000)
        libkmldom.so => /home/biom7/WASP/lib/libkmldom.so (0x00007f9634880000)
        libkmlengine.so => /home/biom7/WASP/lib/libkmlengine.so (0x00007f9634630000)
        libOTBFuzzy-6.2.so.1 => /home/biom7/WASP/lib/libOTBFuzzy-6.2.so.1 (0x00007f9634420000)
        libmuparser.so => /home/biom7/WASP/lib/libmuparser.so (0x00007f96341b0000)
        libOTBMathParser-6.2.so.1 => /home/biom7/WASP/lib/libOTBMathParser-6.2.so.1 (0x00007f9633f90000)
        libshark.so.0 => /home/biom7/WASP/lib/libshark.so.0 (0x00007f9633b10000)
        libboost_serialization.so.1.60.0 => /home/biom7/WASP/lib/libboost_serialization.so.1.60.0 (0x00007f96338d0000)
        libsvm.so => /home/biom7/WASP/lib/libsvm.so (0x00007f96336a0000)
        libopencv_core.so.2.4 => /home/biom7/WASP/lib/libopencv_core.so.2.4 (0x00007f96331d0000)
        libopencv_ml.so.2.4 => /home/biom7/WASP/lib/libopencv_ml.so.2.4 (0x00007f9632f40000)
        libOTBSupervised-6.2.so.1 => /home/biom7/WASP/lib/libOTBSupervised-6.2.so.1 (0x00007f9632d20000)
        libOTBSampling-6.2.so.1 => /home/biom7/WASP/lib/libOTBSampling-6.2.so.1 (0x00007f9632b00000)
        libotbsiftfast-6.2.so.1 => /home/biom7/WASP/lib/libotbsiftfast-6.2.so.1 (0x00007f96328f0000)
        libOTBWavelet-6.2.so.1 => /home/biom7/WASP/lib/libOTBWavelet-6.2.so.1 (0x00007f96326d0000)
        libOTBEdge-6.2.so.1 => /home/biom7/WASP/lib/libOTBEdge-6.2.so.1 (0x00007f9632490000)
        libmuparserx.so.4.0.7 => /home/biom7/WASP/lib/libmuparserx.so.4.0.7 (0x00007f96321c0000)
        libOTBMathParserX-6.2.so.1 => /home/biom7/WASP/lib/libOTBMathParserX-6.2.so.1 (0x00007f9631f80000)
        libOTBPolarimetry-6.2.so.1 => /home/biom7/WASP/lib/libOTBPolarimetry-6.2.so.1 (0x00007f9631d70000)
        libOTBCommandLine-6.2.so.1 => /home/biom7/WASP/lib/libOTBCommandLine-6.2.so.1 (0x00007f9631b50000)
        libOTBCommandLineParser-6.2.so.1 => /home/biom7/WASP/lib/libOTBCommandLineParser-6.2.so.1 (0x00007f9631920000)
        libGLU.so.1 => /usr/lib/x86_64-linux-gnu/libGLU.so.1 (0x00007f96316a0000)
        libGL.so.1 => /usr/lib/x86_64-linux-gnu/mesa/libGL.so.1 (0x00007f9631420000)
        libglfw.so.3 => /home/biom7/WASP/lib/libglfw.so.3 (0x00007f96311f0000)
        libGLEW.so => /home/biom7/WASP/lib/libGLEW.so (0x00007f9630f60000)
        libglut.so.3 => /home/biom7/WASP/lib/libglut.so.3 (0x00007f9630d10000)
        libOTBIceViewer-6.2.so.1 => /home/biom7/WASP/lib/libOTBIceViewer-6.2.so.1 (0x00007f9630ae0000)
        libQtOpenGL.so.4 => /home/biom7/WASP/lib/libQtOpenGL.so.4 (0x00007f96307e0000)
        libQtGui.so.4 => /home/biom7/WASP/lib/libQtGui.so.4 (0x00007f962fb50000)
        libQtCore.so.4 => /home/biom7/WASP/lib/libQtCore.so.4 (0x00007f962f650000)
        libqwt.so.6 => /home/biom7/WASP/lib/libqwt.so.6 (0x00007f962f310000)
        libOTBMapla-6.2.so.1 => /home/biom7/WASP/lib/libOTBMapla-6.2.so.1 (0x00007f962f100000)
        libOTBMonteverdi-6.2.so.1 => /home/biom7/WASP/lib/libOTBMonteverdi-6.2.so.1 (0x00007f962eec0000)
        libOTBOpenThreadsAdapters-6.2.so.1 => /home/biom7/WASP/lib/libOTBOpenThreadsAdapters-6.2.so.1 (0x00007f962ecb0000)
        libOTBRCC8-6.2.so.1 => /home/biom7/WASP/lib/libOTBRCC8-6.2.so.1 (0x00007f962eaa0000)
        libOTBSimulation-6.2.so.1 => /home/biom7/WASP/lib/libOTBSimulation-6.2.so.1 (0x00007f962e830000)
        libOTBTestKernel-6.2.so.1 => /home/biom7/WASP/lib/libOTBTestKernel-6.2.so.1 (0x00007f962e540000)
        libMetadataHelper.so => /home/biom7/WASP/lib/libMetadataHelper.so (0x00007f962e310000)
        libOTBMonteverdiGUI-6.2.so.1 => /home/biom7/WASP/lib/libOTBMonteverdiGUI-6.2.so.1 (0x00007f962e020000)
        libOTBIce-6.2.so.1 => /home/biom7/WASP/lib/libOTBIce-6.2.so.1 (0x00007f962dd30000)
        libOTBMonteverdiCore-6.2.so.1 => /home/biom7/WASP/lib/libOTBMonteverdiCore-6.2.so.1 (0x00007f962da60000)
        libOTBStatistics-6.2.so.1 => /home/biom7/WASP/lib/libOTBStatistics-6.2.so.1 (0x00007f962d840000)
        libOTBCarto-6.2.so.1 => /home/biom7/WASP/lib/libOTBCarto-6.2.so.1 (0x00007f962d610000)
        libOTBQtWidget-6.2.so.1 => /home/biom7/WASP/lib/libOTBQtWidget-6.2.so.1 (0x00007f962d390000)
        libOTBApplicationEngine-6.2.so.1 => /home/biom7/WASP/lib/libOTBApplicationEngine-6.2.so.1 (0x00007f962c8e0000)
        libOTBVectorDataIO-6.2.so.1 => /home/biom7/WASP/lib/libOTBVectorDataIO-6.2.so.1 (0x00007f962c6d0000)
        libOTBIOKML-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOKML-6.2.so.1 (0x00007f962c470000)
        libOTBProjection-6.2.so.1 => /home/biom7/WASP/lib/libOTBProjection-6.2.so.1 (0x00007f962c230000)
        libOTBQtAdapters-6.2.so.1 => /home/biom7/WASP/lib/libOTBQtAdapters-6.2.so.1 (0x00007f962c020000)
        libOTBOpticalCalibration-6.2.so.1 => /home/biom7/WASP/lib/libOTBOpticalCalibration-6.2.so.1 (0x00007f962bde0000)
        libotb6S-6.2.so.1 => /home/biom7/WASP/lib/libotb6S-6.2.so.1 (0x00007f962b810000)
        libOTBImageIO-6.2.so.1 => /home/biom7/WASP/lib/libOTBImageIO-6.2.so.1 (0x00007f962b600000)
        libOTBExtendedFilename-6.2.so.1 => /home/biom7/WASP/lib/libOTBExtendedFilename-6.2.so.1 (0x00007f962b3d0000)
        libOTBIOBSQ-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOBSQ-6.2.so.1 (0x00007f962b1a0000)
        libOTBIOLUM-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOLUM-6.2.so.1 (0x00007f962af80000)
        libOTBIOMSTAR-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOMSTAR-6.2.so.1 (0x00007f962ad70000)
        libOTBIOONERA-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOONERA-6.2.so.1 (0x00007f962ab40000)
        libOTBIORAD-6.2.so.1 => /home/biom7/WASP/lib/libOTBIORAD-6.2.so.1 (0x00007f962a920000)
        libOTBIOTileMap-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOTileMap-6.2.so.1 (0x00007f962a700000)
        libOTBIOGDAL-6.2.so.1 => /home/biom7/WASP/lib/libOTBIOGDAL-6.2.so.1 (0x00007f962a4a0000)
        libOTBGdalAdapters-6.2.so.1 => /home/biom7/WASP/lib/libOTBGdalAdapters-6.2.so.1 (0x00007f962a270000)
        libOTBVectorDataBase-6.2.so.1 => /home/biom7/WASP/lib/libOTBVectorDataBase-6.2.so.1 (0x00007f962a060000)
        libOTBCurlAdapters-6.2.so.1 => /home/biom7/WASP/lib/libOTBCurlAdapters-6.2.so.1 (0x00007f9629e40000)
        libOTBImageManipulation-6.2.so.1 => /home/biom7/WASP/lib/libOTBImageManipulation-6.2.so.1 (0x00007f9629c30000)
        libOTBStreaming-6.2.so.1 => /home/biom7/WASP/lib/libOTBStreaming-6.2.so.1 (0x00007f9629a20000)
        libOTBImageBase-6.2.so.1 => /home/biom7/WASP/lib/libOTBImageBase-6.2.so.1 (0x00007f96297f0000)
        libOTBMetadata-6.2.so.1 => /home/biom7/WASP/lib/libOTBMetadata-6.2.so.1 (0x00007f9629520000)
        libOTBTransform-6.2.so.1 => /home/biom7/WASP/lib/libOTBTransform-6.2.so.1 (0x00007f9629310000)
        libOTBOSSIMAdapters-6.2.so.1 => /home/biom7/WASP/lib/libOTBOSSIMAdapters-6.2.so.1 (0x00007f96290d0000)
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        libITKQuadEdgeMesh-4.12.so.1 => /home/biom7/WASP/lib/libITKQuadEdgeMesh-4.12.so.1 (0x00007fb884bbb000)
        libITKMetaIO-4.12.so.1 => /home/biom7/WASP/lib/libITKMetaIO-4.12.so.1 (0x00007fb8752b2000)
        libITKLabelMap-4.12.so.1 => /home/biom7/WASP/lib/libITKLabelMap-4.12.so.1 (0x00007fb884bb7000)
        libITKIOImageBase-4.12.so.1 => /home/biom7/WASP/lib/libITKIOImageBase-4.12.so.1 (0x00007fb875287000)
        libITKBiasCorrection-4.12.so.1 => /home/biom7/WASP/lib/libITKBiasCorrection-4.12.so.1 (0x00007fb88485b000)
        libITKPolynomials-4.12.so.1 => /home/biom7/WASP/lib/libITKPolynomials-4.12.so.1 (0x00007fb883439000)
        libITKFFT-4.12.so.1 => /home/biom7/WASP/lib/libITKFFT-4.12.so.1 (0x00007fb881af1000)
        libfftw3.so.3 => /home/biom7/WASP/lib/libfftw3.so.3 (0x00007fb874f70000)
        libfftw3_threads.so.3 => /home/biom7/WASP/lib/libfftw3_threads.so.3 (0x00007fb874d50000)
        libfftw3f.so.3 => /home/biom7/WASP/lib/libfftw3f.so.3 (0x00007fb874a50000)
        libfftw3f_threads.so.3 => /home/biom7/WASP/lib/libfftw3f_threads.so.3 (0x00007fb874840000)
        libITKOptimizersv4-4.12.so.1 => /home/biom7/WASP/lib/libITKOptimizersv4-4.12.so.1 (0x00007fb87480c000)
        libITKOptimizers-4.12.so.1 => /home/biom7/WASP/lib/libITKOptimizers-4.12.so.1 (0x00007fb8747a9000)
        libITKKLMRegionGrowing-4.12.so.1 => /home/biom7/WASP/lib/libITKKLMRegionGrowing-4.12.so.1 (0x00007fb881381000)
        libITKWatersheds-4.12.so.1 => /home/biom7/WASP/lib/libITKWatersheds-4.12.so.1 (0x00007fb881f68000)
        libITKStatistics-4.12.so.1 => /home/biom7/WASP/lib/libITKStatistics-4.12.so.1 (0x00007fb874786000)
        libitkNetlibSlatec-4.12.so.1 => /home/biom7/WASP/lib/libitkNetlibSlatec-4.12.so.1 (0x00007fb881d29000)
        libITKSpatialObjects-4.12.so.1 => /home/biom7/WASP/lib/libITKSpatialObjects-4.12.so.1 (0x00007fb874732000)
        libITKMesh-4.12.so.1 => /home/biom7/WASP/lib/libITKMesh-4.12.so.1 (0x00007fb881aea000)
        libITKTransform-4.12.so.1 => /home/biom7/WASP/lib/libITKTransform-4.12.so.1 (0x00007fb883441000)
        libITKPath-4.12.so.1 => /home/biom7/WASP/lib/libITKPath-4.12.so.1 (0x00007fb874720000)
        libITKCommon-4.12.so.1 => /home/biom7/WASP/lib/libITKCommon-4.12.so.1 (0x00007fb874605000)
        libitksys-4.12.so.1 => /home/biom7/WASP/lib/libitksys-4.12.so.1 (0x00007fb8745a6000)
        libITKVNLInstantiation-4.12.so.1 => /home/biom7/WASP/lib/libITKVNLInstantiation-4.12.so.1 (0x00007fb87451c000)
        libitkvnl_algo-4.12.so.1 => /home/biom7/WASP/lib/libitkvnl_algo-4.12.so.1 (0x00007fb8744ac000)
        libitkvnl-4.12.so.1 => /home/biom7/WASP/lib/libitkvnl-4.12.so.1 (0x00007fb874005000)
        libitkv3p_netlib-4.12.so.1 => /home/biom7/WASP/lib/libitkv3p_netlib-4.12.so.1 (0x00007fb873ef8000)
        libitknetlib-4.12.so.1 => /home/biom7/WASP/lib/libitknetlib-4.12.so.1 (0x00007fb873ed3000)
        libitkvcl-4.12.so.1 => /home/biom7/WASP/lib/libitkvcl-4.12.so.1 (0x00007fb88322c000)
        libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007fb873cb0000)
        libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fb8739a0000)
        libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fb873790000)
        libboost_unit_test_framework.so.1.60.0 => /home/biom7/WASP/lib/libboost_unit_test_framework.so.1.60.0 (0x00007fb8734c0000)
        libboost_filesystem.so.1.60.0 => /home/biom7/WASP/lib/libboost_filesystem.so.1.60.0 (0x00007fb873290000)
        libboost_system.so.1.60.0 => /home/biom7/WASP/lib/libboost_system.so.1.60.0 (0x00007fb873080000)
        libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007fb872ce0000)
        libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007fb872ac0000)
        libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fb8726f0000)
        libgeos_c.so.1 => /home/biom7/WASP/lib/libgeos_c.so.1 (0x00007fb8724a0000)
        libsqlite3.so => /home/biom7/WASP/lib/libsqlite3.so (0x00007fb8721c0000)
        libexpat.so => /home/biom7/WASP/lib/libexpat.so (0x00007fb871f80000)
        libopenjp2.so.7 => /home/biom7/WASP/lib/libopenjp2.so.7 (0x00007fb871d10000)
        libnetcdf.so.11 => /home/biom7/WASP/lib/libnetcdf.so.11 (0x00007fb86e980000)
        libhdf5_hl.so.100.1.0 => /home/biom7/WASP/lib/libhdf5_hl.so.100.1.0 (0x00007fb86e750000)
        libhdf5.so.100.1.0 => /home/biom7/WASP/lib/libhdf5.so.100.1.0 (0x00007fb86e170000)
        libmfhdfalt.so.4.2.13 => /home/biom7/WASP/lib/libmfhdfalt.so.4.2.13 (0x00007fb86df40000)
        libdfalt.so.4.2.13 => /home/biom7/WASP/lib/libdfalt.so.4.2.13 (0x00007fb86dc80000)
        libjpeg.so.62 => /home/biom7/WASP/lib/libjpeg.so.62 (0x00007fb86da00000)
        libtiff.so.5 => /home/biom7/WASP/lib/libtiff.so.5 (0x00007fb86d780000)
        libpng.so.1 => /home/biom7/WASP/lib/libpng.so.1 (0x00007fb86d530000)
        librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007fb86d310000)
        /lib64/ld-linux-x86-64.so.2 (0x00007fb884c00000)
        libgeos.so.3.6.1 => /home/biom7/WASP/lib/libgeos.so.3.6.1 (0x00007fb86cf50000)
        libfreetype.so => /home/biom7/WASP/lib/libfreetype.so (0x00007fb86cc90000)
        libproj.so.12 => /home/biom7/WASP/lib/libproj.so.12 (0x00007fb86ca10000)
        libssl.so.1.0.0 => /home/biom7/WASP/lib/libssl.so.1.0.0 (0x00007fb86c790000)
        libcrypto.so.1.0.0 => /home/biom7/WASP/lib/libcrypto.so.1.0.0 (0x00007fb86c3a0000)
        libminizip.so => /home/biom7/WASP/lib/libminizip.so (0x00007fb86c190000)
        liburiparser.so => /home/biom7/WASP/lib/liburiparser.so (0x00007fb86bf60000)
        libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007fb86bd00000)
        libxcb-dri3.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-dri3.so.0 (0x00007fb86baf0000)
        libxcb-present.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-present.so.0 (0x00007fb86b8e0000)
        libxcb-sync.so.1 => /usr/lib/x86_64-linux-gnu/libxcb-sync.so.1 (0x00007fb86b6c0000)
        libxshmfence.so.1 => /usr/lib/x86_64-linux-gnu/libxshmfence.so.1 (0x00007fb86b4b0000)
        libglapi.so.0 => /usr/lib/x86_64-linux-gnu/libglapi.so.0 (0x00007fb86b270000)
        libXext.so.6 => /usr/lib/x86_64-linux-gnu/libXext.so.6 (0x00007fb86b040000)
        libXdamage.so.1 => /usr/lib/x86_64-linux-gnu/libXdamage.so.1 (0x00007fb86ae30000)
        libXfixes.so.3 => /usr/lib/x86_64-linux-gnu/libXfixes.so.3 (0x00007fb86ac20000)
        libX11-xcb.so.1 => /usr/lib/x86_64-linux-gnu/libX11-xcb.so.1 (0x00007fb86aa00000)
        libX11.so.6 => /usr/lib/x86_64-linux-gnu/libX11.so.6 (0x00007fb86a6c0000)
        libxcb-glx.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-glx.so.0 (0x00007fb86a4a0000)
        libxcb-dri2.so.0 => /usr/lib/x86_64-linux-gnu/libxcb-dri2.so.0 (0x00007fb86a280000)
        libxcb.so.1 => /usr/lib/x86_64-linux-gnu/libxcb.so.1 (0x00007fb86a050000)
        libXxf86vm.so.1 => /usr/lib/x86_64-linux-gnu/libXxf86vm.so.1 (0x00007fb869e40000)
        libdrm.so.2 => /usr/lib/x86_64-linux-gnu/libdrm.so.2 (0x00007fb869c10000)
        libXrandr.so.2 => /usr/lib/x86_64-linux-gnu/libXrandr.so.2 (0x00007fb869a00000)
        libXinerama.so.1 => /usr/lib/x86_64-linux-gnu/libXinerama.so.1 (0x00007fb8697e0000)
        libXi.so.6 => /usr/lib/x86_64-linux-gnu/libXi.so.6 (0x00007fb8695d0000)
        libXcursor.so.1 => /usr/lib/x86_64-linux-gnu/libXcursor.so.1 (0x00007fb8693c0000)
        libXrender.so.1 => /usr/lib/x86_64-linux-gnu/libXrender.so.1 (0x00007fb8691a0000)
        libitkdouble-conversion-4.12.so.1 => /home/biom7/WASP/lib/libitkdouble-conversion-4.12.so.1 (0x00007fb880cb2000)
        libboost_timer.so.1.60.0 => /home/biom7/WASP/lib/libboost_timer.so.1.60.0 (0x00007fb868ee0000)
        libXau.so.6 => /usr/lib/x86_64-linux-gnu/libXau.so.6 (0x00007fb868cc0000)
        libXdmcp.so.6 => /usr/lib/x86_64-linux-gnu/libXdmcp.so.6 (0x00007fb868aa0000)
        libboost_chrono.so.1.60.0 => /home/biom7/WASP/lib/libboost_chrono.so.1.60.0 (0x00007fb868890000)

For the moment it seems to work, so far it has produced the following output

biom7@Biometrie7:~$ WASP --input $(find /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM -type f -name '*MTD_ALL.xml' | grep -v 'L2NOTV' | grep '201809') --out /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP --date 20180915
2019-03-22 11:03:27,742 [WARNI] No logging-path provided. No log-file will be created!
2019-03-22 11:03:27,743 [INFO ] PATH /home/biom7/WASP/bin
2019-03-22 11:03:27,743 [INFO ] LD_LIBRARY_PATH /home/biom7/WASP/bin/../lib
2019-03-22 11:03:27,743 [INFO ] OTB_APPLICATION_PATH /home/biom7/WASP/bin/../lib/otb/applications
2019-03-22 11:03:28,207 [INFO ] Platform found: SENTINEL2
2019-03-22 11:03:28,208 [INFO ] Logging set to DEBUG
2019-03-22 11:03:28,366 [WARNI] XML-Input dates interval is smaller than 40 days!
2019-03-22 11:03:28,368 [WARNI] The given Half synthesis period of 23 days differs from the one in the datelist with 13.0 days.
2019-03-22 11:03:28,368 [INFO ] Synthesis date is: 2018-09-15T00:00:00.000Z
2019-03-22 11:03:28,368 [INFO ] Half synthesis period in days is: 23
2019-03-22 11:03:28,368 [INFO ] GDAL_CACHEMAX 16384
2019-03-22 11:03:28,368 [INFO ] ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS 8
2019-03-22 11:03:31,440 [INFO ] ================= This is WASP Version 1.0 =================
2019-03-22 11:03:31,447 [DEBUG] Cannot create directory /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP
2019-03-22 11:03:31,451 [DEBUG] Cannot create directory /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP
2019-03-22 11:03:31,454 [INFO ] Writing GIPP-File to: /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP/TS_GIPP_v1-1.xml
2019-03-22 11:03:31,469 [INFO ] otbApplicationLauncherCommandLine CompositePreprocessing -xml /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_MTD_ALL.xml -outcld /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP/0_cld10.tif -outwat /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP/0_wat10.tif -outsnw /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP/0_snw10.tif -outaot /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP/0_aot10.tif -outr1 /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP/0_CP_R1.tif -outr2 /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/WASP/0_CP_R2.tif -scatteringcoeffsr1 /home/biom7/WASP/bin/../lib/otb/applications/../../../share/scattering_coeffs_10m.txt -scatteringcoeffsr2 /home/biom7/WASP/bin/../lib/otb/applications/../../../share/scattering_coeffs_20m.txt -progress 1
2019-03-22 11:03:31,773 [DEBUG] XML found: /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_MTD_ALL.xml
2019-03-22 11:03:32,209 [DEBUG] ComputeNDVI Filenames found:
2019-03-22 11:03:32,210 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B4.tif
2019-03-22 11:03:32,210 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B8.tif
2019-03-22 11:03:32,377 [DEBUG] S2AnglesRaster Filename found:
2019-03-22 11:03:32,378 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B2.tif
2019-03-22 11:03:32,467 [DEBUG] Number of Bands for current Resolution: 4
2019-03-22 11:03:32,468 [DEBUG] Current resolution: 10
2019-03-22 11:03:32,496 [DEBUG] Directional Correction Filenames found:
2019-03-22 11:03:32,496 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B2.tif
2019-03-22 11:03:32,547 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B3.tif
2019-03-22 11:03:32,627 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B4.tif
2019-03-22 11:03:32,653 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B8.tif
2019-03-22 11:03:32,714 [DEBUG] S2AnglesRaster Filename found:
2019-03-22 11:03:32,715 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B5.tif
2019-03-22 11:03:32,782 [DEBUG] Number of Bands for current Resolution: 6
2019-03-22 11:03:32,783 [DEBUG] Current resolution: 20
2019-03-22 11:03:32,810 [DEBUG] Directional Correction Filenames found:
2019-03-22 11:03:32,810 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B5.tif
2019-03-22 11:03:32,835 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B6.tif
2019-03-22 11:03:32,877 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B7.tif
2019-03-22 11:03:32,928 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B8A.tif
2019-03-22 11:03:32,987 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B11.tif
2019-03-22 11:03:33,066 [DEBUG] /mnt/d/Software/MAJAshared/repL2/Southern_Carpathians/35TLL/GIPP_MAJA_3.1.2_TM/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0/SENTINEL2A_20180901-092221-909_L2A_T35TLL_C_V1-0_FRE_B12.tif

It has finished okay (It has artifacts, but I guess it is because I used a shorter time interval)

mos

Kind regards, Ignacio

petket-5 commented 5 years ago

Congratulations first of all, WASP technically runs ;) I will update the readme to include this library. I am still suprised though, because my CentOS7 VM (as well as the Ubuntu and CentOS 6 ones) came with that library preinstalled so I assumed it would be preinstalled for everybody. In any case I will work on removing that dependency, cause WASP doesn't profit from it anyway. Thank you again for solving this with me.

To follow up on your output: Yes, it seems that the time period is not enough for WASP to observe all pixels in the image without clouds at least once - especially in the north-west of your image. You should make use of the whole 46-day period that is set by default, so maybe try adding some L2A products from Mid to End of August for example.

Maybe @olivierhagolle would like to comment on the artifacts as well.

Kind regards, Peter

olivierhagolle commented 5 years ago

Hi, nice, we have our first stand alone user ! Thanks Peter and Ignacio !

Most artefacts must be flagged as clouds, there is a cloud mask with the synthesis http://www.cesbio.ups-tlse.fr/multitemp/?page_id=14019. Of course, syntheses have artefacts, and the art of synthesis is to minimise artefacts.

Here, a thin cirrus cloud seems to have been missed by MAJA. Using a longer period should blend it with the other cloud free dates. By the way, which version of MAJA did you use ?

As said by Peter, our recommendation is a total synthesis period of 46 days. Maybe a bit longer for very cloudy regions.

borlafgis commented 5 years ago

Hello, Re-did the experiment with the recommended period and the artifacts where aminorated. There are some "haze" left, but I do not know if it is even possible to elliminate it completely... maybe I should examine a longer period than 8 days when using MAJA? (I am using version 3.1.2 3.2.2, albeit the folders created by MAJA read GIPP_MAJA_3.1.2_TM)

mos2

petket-5 commented 5 years ago

Hi Ignacio,

I hope it's okay that I closed the issue already due to the fact that the original technical problem was resolved. Maja improves its accuracy with a multi-temporal approach, so I recommend you to process a set of at minimum 8 Level-1C products before the date you actually want to process. That should improve the quality of Maja's Level-2 cloud mask. If you want to talk more about this subject, I would advise to change to maja's dedicated git-repository. To come back to WASP: The quality of WASP's output is directly dependent on the cloud masks provided by Maja. Thus, the errors can propagate. We tried to decrease a chance of having such artifacts in the final image but it's not always perfect. Mountainous areas are difficult in general as they pose quite a high possibility of proximate clouds all the time. Anyway, the resulting reflectances of the "cloudy" pixels are very close to the non-cloudy case. So unless your application is highly sensitive to these kind of artifacts you should not notice the difference.

Peter

borlafgis commented 5 years ago

Hello Peter

Sorry for the off-topic comment, I wanted to answer to Olivier’s comment. I am aware that mountains are one the most difficult places to try this (in fact, this is from September, one of the “easy” months where there is no snow). I wanted to create monthly mosaics to characterize phenology in the context of forest type classification, so I am not sure how the classifier will cope with the cloudy pixels. I guess I will make some tests with WASP and with the algorithm of presented by Griffiths et al., 2019 to see which one fares better (they use the Haze-Optimized Transformation by Zhang et al., 2002 to identify haze and thin clouds). Yesterday I thought to try and incorporate the HOT in WASP… What do you think?.

Thanks a lot for your help, Ignacio

olivierhagolle commented 5 years ago

Hi Ignacio,

That's a nice landscape you are working on !

The issue with mountains is that the cirrus detection is not as efficient as in plains, because high elevation pixels can also be seen in the 1.38 µm band, so you have to increase the detection threshold in order to avoid classifying mountains as clouds all year long.

However, I have introduced a multi-temporal version of the HOT transform, and worked on a better cirrus detection in next MAJA. As MAJA 3.3 should be a bug-fix version, it will be introduced in MAJA 3.4.

But something puzzles me, the fact that you want to use composites (with inaccurate observation dates), to characterize phenology, which needs accurate dates. I would recommend keeping L2A for that.

Best regards, Olivier

borlafgis commented 5 years ago

Hello Olivier

I guess I will try and make some tests when MAJA 3.4 comes out.

Regarding the composites, I wanted to create composites to reduce a the data volume, creating 12 synthetic images to capture how forest changes along the year. The other reason was that I am also supposed to fuse S1 and S2 images. However SAR data has its own problems, like geometric distortions, 'specke' and a huge influence of the terrain or humidity, so its time series are quite noisy. David Small proposed some methods to solve these problems, one of which is creating composites, aminorating these effects, obtaining a less 'spiky' time series (if you are curious here is an example). My idea was to do something similar with S2... but, there is a better alternative?

Kind regards, Ignacio

olivierhagolle commented 5 years ago

For Land cover, syntheses should be OK, but to study phenology, I would use L2A to keep all info about phenology. This means your method will have to handle data gaps due to clouds, which can be complicated.

Regarding Sentinel-1, did you try this tool ? http://www.cesbio.ups-tlse.fr/multitemp/?p=14905

borlafgis commented 5 years ago

Hello Olivier

Yes, In fact my supervisor already had processed the images using that program before I came to Romania:

OTB

The main problem is that what it does not consider the effect of the scattering area, nor it does mask the areas that suffer foreshortening, so the effect of the slopes is huge. However, If the effect of the slope is considered, I get something like this:

gamma

As you can see, the foreshortened areas are masked (in this case the white is NODATA), and the illumination pattern has been greatly diminished.

I wish I could use it, but, as far as I know, it lacks some features that are necessary in my study area.

EkicierNico commented 5 years ago

Hello Peter, Olivier, I'm trying to use Wasp in a docker, here is the Dockerfile :

FROM centos:7 RUN yum -y update RUN yum -y upgrade RUN yum -y install mesa-libGLU-devel nano zip unzip file git curl COPY WASP-v1.1.run / RUN mkdir /wasp RUN bash WASP-v1.1.run --target /wasp RUN rm WASP-v1.1.run COPY EnvWasp.sh / RUN bash EnvWasp.sh

Actually, I have exactly the same error : "NameError: Cannot find CompositePreprocessing in the list of OTB Apps". As you can see in Dockerfile, mesa-libGLU-devel library is installed.

EnvWasp.sh :

!/bin/bash

YOUR_WASP_INSTALL_PATH=/wasp

export PATH=$YOUR_WASP_INSTALL_PATH/bin:$PATH export OTB_APPLICATION_PATH=$YOUR_WASP_INSTALL_PATH/lib/otb/applications export LD_LIBRARY_PATH=$YOUR_WASP_INSTALL_PATH/lib

ldd $YOUR_WASP_INSTALL_PATH/lib/otbapp_CompositePreprocessing.so ldd $YOUR_WASP_INSTALL_PATH/lib/otb/applications/otbapp_CompositePreprocessing.so

Thanks for your help. Nicolas

petket-5 commented 5 years ago

Hi Nicolas,

Thank you for your feedback. Given that this issue is related to a different environment, I propose that you create a new one indicating in the title that this is a docker issue.

Other than that, the info you provided seems sufficient for me to try and recreate the problem. Once I know more, I will respond in the new issue.

Kind regards, Peter

EkicierNico commented 5 years ago

Hi Peter, Ok I will create a new issue for that.

If you want more informations, don't hesitate.

Thanks you ! Best

Nicolas