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CNS-OIST / STEPS

Public release repository for STochastic Engine of Pathway Simulation (STEPS)
http://steps.sourceforge.net
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Release 4.1.0 #30

Closed WeiliangChenOIST closed 1 year ago

WeiliangChenOIST commented 1 year ago

Version 4.1.0 (2023-04)

License update

  1. Project license changed to GPL3.0, resolve #28

Python API

  1. Added automatic saving to HDF5 files (HDF5Handler) and XDMF files (XDMFHandler). Data saved with XDMFHandler can be visualized with scientific visualization software like Paraview.

Internal code base

  1. Performance improvement: Identify the tetrahedra with molecule changes via diffusion (changes caused by reaction are updated by the ssa operator) and update the associated propensities.