@jychoi-hpc @kshitij-v-mehta @mw70
When I used the following in my workflow.swift:
arguments2 = split("heat.bp staged.bp FLEXPATH \"\" MPI \"\" \"T,dt\" \"SZ:accuracy=0.001\"", " "); ( try the other compression as well)
It breaks. The error is given below. I tried on different machines and also tried to rebuild every thing from scratch. I see that some people have successfully run this options. tried with TAU and without TAU as well.
@jychoi-hpc @kshitij-v-mehta @mw70 When I used the following in my workflow.swift:
arguments2 = split("heat.bp staged.bp FLEXPATH \"\" MPI \"\" \"T,dt\" \"SZ:accuracy=0.001\"", " "); ( try the other compression as well)
It breaks. The error is given below. I tried on different machines and also tried to rebuild every thing from scratch. I see that some people have successfully run this options. tried with TAU and without TAU as well.
rank 0: Write variable 12: dT Error in `stage_write/stage_write': corrupted size vs. prev_size: 0x000000000330b740 ======= Backtrace: ========= /lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f21229d77e5] /lib/x86_64-linux-gnu/libc.so.6(+0x80dfb)[0x7f21229e0dfb] /lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7f21229e453c] /lib/x86_64-linux-gnu/libz.so.1(deflateEnd+0x4e)[0x7f212341708e] /home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/sz-develop-brcu2sscr2oucsvopcpncy7z2xdmfsic/lib/libsz.so.1(zlib_compress5+0x144)[0x7f21231ddf04] /home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/sz-develop-brcu2sscr2oucsvopcpncy7z2xdmfsic/lib/libsz.so.1(SZ_compress_args_double+0x2f5)[0x7f21231ef4f5] /home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/sz-develop-brcu2sscr2oucsvopcpncy7z2xdmfsic/lib/libsz.so.1(SZ_compress_args+0x43)[0x7f21231f4bb3] /home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/sz-develop-brcu2sscr2oucsvopcpncy7z2xdmfsic/lib/libsz.so.1(SZ_compress+0x4c)[0x7f21231f4e1c] stage_write/stage_write[0x4aca62] stage_write/stage_write[0x4a95d3] stage_write/stage_write[0x4a849e] stage_write/stage_write[0x40b580] stage_write/stage_write[0x40baf1] stage_write/stage_write[0x40c0ed] stage_write/stage_write[0x4090e7] stage_write/stage_write[0x408c77] stage_write/stage_write[0x407c05] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f2122980830] stage_write/stage_write[0x4064d9] ======= Memory map: ======== 00400000-005e5000 r-xp 00000000 08:03 97655616 /home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/savanna-develop-5ivzn2ix66rrsufmfqwr5hcug6nah6go/Heat_Transfer/stage_write/stage_write 007e4000-007e6000 r--p 001e4000 08:03 97655616 /home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/savanna-develop-5ivzn2ix66rrsufmfqwr5hcug6nah6go/Heat_Transfer/stage_write/stage_write 007e6000-007f0000 rw-p 001e6000 08:03 97655616 /home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/savanna-develop-5ivzn2ix66rrsufmfqwr5hcug6nah6go/Heat_Transfer/stage_write/stage_write 007f0000-007f7000 rw-p 00000000 00:00 0 0174d000-033fc000 rw-p 00000000 00:00 0 [heap] 7f2114000000-7f2114021000 rw-p 00000000 00:00 0 7f2114021000-7f2118000000 ---p 00000000 00:00 0 7f211c000000-7f211c021000 rw-p 00000000 00:00 0 7f211c021000-7f2120000000 ---p 00000000 00:00 0 7f2120404000-7f2120405000 ---p 00000000 00:00 0 7f2120405000-7f2120c05000 rw-p 00000000 00:00 0 7f2120c05000-7f2120c1c000 r-xp 00000000 08:03 72617629 /lib/x86_64-linux-gnu/libresolv-2.23.so 7f2120c1c000-7f2120e1c000 ---p 00017000 08:03 72617629 /lib/x86_64-linux-gnu/libresolv-2.23.so 7f2120e1c000-7f2120e1d000 r--p 00017000 08:03 72617629 /lib/x86_64-linux-gnu/libresolv-2.23.so 7f2120e1d000-7f2120e1e000 rw-p 00018000 08:03 72617629 /lib/x86_64-linux-gnu/libresolv-2.23.so 7f2120e1e000-7f2120e20000 rw-p 00000000 00:00 0 7f2120e20000-7f2120e25000 r-xp 00000000 08:03 72617595 /lib/x86_64-linux-gnu/libnss_dns-2.23.so 7f2120e25000-7f2121025000 ---p 00005000 08:03 72617595 /lib/x86_64-linux-gnu/libnss_dns-2.23.so 7f2121025000-7f2121026000 r--p 00005000 08:03 72617595 /lib/x86_64-linux-gnu/libnss_dns-2.23.so 7f2121026000-7f2121027000 rw-p 00006000 08:03 72617595 /lib/x86_64-linux-gnu/libnss_dns-2.23.so