[manualpipe] ENA BAM 20211004 - Githubissues

COG-UK / dipi-group

Data integrity and pipeline integration working group

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[manualpipe] ENA BAM 20211004 #142

Closed SamStudio8 closed 3 years ago

SamStudio8 commented 3 years ago

Brief description

Nextflow stall

Pipeline exit code: NA

Executed by: @SamStudio8

[x] I am sure this pipeline is not already running (Only relevant for non-flocked pipelines)

[x] Engage pipeline via mqtt from a clean dedicated mqtt environment
[ ] Disable NXF cache destruction (only applicable for ENA BAM pipe)
[ ] Check output if necessary
[ ] Check mqtt message is sent confirming completion, or send one if required (check in #tael-steam)
[ ] Re-enable NXF cache destruction (if disabled)

[x] Set appropriate issue flags and assignee
[x] Manual intervention complete
"Normal" service disrupted? YES/NO
If yes, describe impact: