[manualpipe] ENA BAM 20211122

[SamStudio8]

Brief description

NF stalled

Pipeline exit code: [Exit code]

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Executed by: [Name or initials] [Site code]

• [ ] I am sure this pipeline is not already running (Only relevant for non-flocked pipelines)

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• [ ] Engage pipeline via mqtt from a clean dedicated mqtt environment
• [x] Disable NXF cache destruction (only applicable for ENA BAM pipe)
• [ ] Check output if necessary
• [ ] Check mqtt message is sent confirming completion, or send one if required (check in #tael-steam)
• [x] Re-enable NXF cache destruction (if disabled)

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• [x] Set appropriate issue flags and assignee

• [x] Manual intervention complete

• "Normal" service disrupted? YES/NO

• If yes, describe impact:

[SamStudio8]

Disabled cache destruction in the hope we caught it in time but will investigate tomorrow

[SamStudio8]

Sadly looks like most of the cache has been lost so will nurse this pipe through the rest of the week.

[SamStudio8]

another nextflow stall i hate this pipe so much

[SamStudio8]

GIVE ME STRENGTH IT STALLED AGAIN

[SamStudio8]

GOOD BYE YOU WRECK