[manualpipe] Gisaid 2022-02-28

[BioWilko]

Brief description

Gisaid submission pipe failed after 8 hours with the error ocarina.service_outbound.tokens.json does not appear to be valid JSON

Pipeline exit code: 78

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Executed by: @BioWilko BIRM

• [x] I am sure this pipeline is not already running (Only relevant for non-flocked pipelines)

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• [x] Engage pipeline via mqtt from a clean dedicated mqtt environment
• [ ] Disable NXF cache destruction (only applicable for ENA BAM pipe)
• [x] Check output if necessary
• [x] Check mqtt message is sent confirming completion, or send one if required (check in #tael-steam)
• [ ] Re-enable NXF cache destruction (if disabled)

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• [x] Set appropriate issue flags and assignee

• [x] Manual intervention complete

• "Normal" service disrupted? YES/NO

• If yes, describe impact:

[BioWilko]

kicked pipeline, all appears well, can get to the bottom of the new exit code in the AM

Edit: On further inspection it was just a connection error....