COMBINE-lab RapClust issues

COMBINE-lab / RapClust

Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes

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issues

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Update eqnet.py to work in Python3

#21 IdoBar opened 4 months ago
0
How to create count matrix Rapclust with config.yaml?

#20 mathavanpu opened 2 years ago
0
Question on how to use RapClust with Salmon

#19 lychen83 opened 6 years ago
0
Select reduced transcriptome from clusters

#18 mpaya opened 7 years ago
2
lost contigs along the way ?

#17 TristanLefebure closed 7 years ago
2
yeilds -> yields

#16 mdshw5 closed 7 years ago
1
itertools

#15 TristanLefebure closed 7 years ago
2
Salmon > RapClust pipeline compatibility

#14 Quarkins closed 7 years ago
2
TypeError: 'NoneType' object has no attribute '__getitem__'

#13 pezhmansafdari closed 7 years ago
9
Update README.md

#12 k3yavi closed 8 years ago
0
Parsed json for auxDir

#11 k3yavi closed 8 years ago
1
issue 9 possible resolution

#10 k3yavi closed 8 years ago
5
support user-defined aux directory

#9 johnsolk closed 8 years ago
1
RapClust with no params throws a stack trace

#8 tseemann closed 8 years ago
0
index out of bounds error

#7 jesgomez closed 8 years ago
5
Handle multiple (> 2) conditions in the likelihood ratio test

#6 rob-p opened 8 years ago
1
Add a Gitter chat badge to README.md

#5 gitter-badger closed 8 years ago
0
Greedy Heuristic for improving FN

#4 k3yavi opened 8 years ago
0
Strand specific protocol for Pipeline

#3 k3yavi opened 8 years ago
0
Upper Bound Recall-- with GTF (Corset)

#2 k3yavi closed 8 years ago
3
Upper Bound Recall--without GTF

#1 k3yavi closed 8 years ago
1