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COMBINE-lab / SalmonTools

Useful tools for working with Salmon output
BSD 3-Clause "New" or "Revised" License
36 stars 20 forks source link

The command realpath, used by the script, is not available on mac #12

Closed RxLoutre closed 3 years ago

RxLoutre commented 3 years ago

Hello everyone,

Ran into this issue when trying out the generateDecoyTranscriptome bash script :

****************
*** getDecoy ***
****************
./generateDecoyTranscriptome.sh: line 52: realpath: command not found

***************
*** ABORTED ***
***************

An error occurred. Exiting...

And I solved using this issue : https://github.com/whatwg/html-build/issues/90

Just a note for others users that might run into the same problem !

Best,