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COMBINE-lab / SalmonTools

Useful tools for working with Salmon output
BSD 3-Clause "New" or "Revised" License
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GenerateDecoy with multiple transcriptome fasta files at the -t argument #8

Open Norbittner opened 5 years ago

Norbittner commented 5 years ago

Hi

I'm stuck at the moment to generate a decoy file from two transcriptome fasta files (A. thaliana cDna and ncrna from Ensemblplants). I tried several ways of putting both files after the -t argument (like , or ; or using -t two times) but nothing worked. I guess there is a super easy solution for that. Or can i map on the level of Salmon to two indices ? Many thanks in advance.