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COMBINE-lab / alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
https://alevin-fry.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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What is the difference between generate-permit-list --expected-ori "either" and "both"? #107

Closed ColeWunderlich closed 1 year ago

ColeWunderlich commented 1 year ago

I noticed that there areeither and both options for the --expected-ori flag when running generate-permit-list. Is there a difference between these two options, or do they both allow for retaining forward and rc mappings?

rob-p commented 1 year ago

Hi @ColeWunderlich,

Here either is just a synonym for both. They have exactly the same effect in the code, and if the string passed to --expected-ori is either or both, then both forward and rc mappings will be retained.

ColeWunderlich commented 1 year ago

Awesome, thanks @rob-p!