COMBINE-lab / alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
https://alevin-fry.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Develop #139

Closed rob-p closed 3 months ago

rob-p commented 3 months ago

Update to work with new libradicl design. Substantial refactor of reading code. Update external dependencies to new versions. Remove dependency on rust-htslib in favor of noodles.