Building on Apple M1 / M2 Silicon

COMBINE-lab / cuttlefish

Building the compacted de Bruijn graph efficiently from references or reads.

BSD 3-Clause "New" or "Revised" License

83 stars 9 forks source link

Closed theJasonFan closed 1 year ago

theJasonFan commented 1 year ago

Changes:

Added a new patch to KMC cut from: https://github.com/theJasonFan/KMC/tree/cuttlefish so KMC
- Uses SIMD Everywhere for intrinsics
- Builds with appropriate compiler flags to link locally installed zlib and bzip2 libraries
Updated CMakeLists.txt to obtain cache line size from apple arm64 machines with updated sysctl call.