Open Krannich479 opened 3 years ago
inspect colors per kmer
This would also help with mine and the question of @jamshed-k #3 : "to know if some segment with id x is shared among multiple references or not ". While this information is in the GFA output it gets computational expensive to figure out for each of the nodes in what references is was present when the graph gets large
Hello @Krannich479, glad to know your interest in using cuttlefish (and thanks for attending the DSB'21 talk)!
The functionalities that you proposed to include looks great. We certainly have these issues (and more) in the roadmap for the cuttlefish-expansion process; but these are presently prioritized after some current development milestones that we've been working on. Right now I'm short on work-cycles to put into the expansion. But you (and @rickbeeloo!) can rest assured that relevant functionalities will be supported soon—it may take a few months.
Also, let us know if we can help with any of the currently supported features!
Regards.
I am very interested in using cuttlefish from within C++ code and was wondering if it would be possible for you to provide some kind of C++ API / header library? I'd be particularly interested in functionality like
Minimal:
For convenience:
PS: Great talk and contribution to DSB2021! Glad I could learn more about cuttlefish there.