search

COMBINE-lab / minnow

10 stars 2 forks source link

Decoys in README instructions #23

Closed baraaorabi closed 2 years ago

baraaorabi commented 3 years ago

In the README file, when constructing Salmon index, shouldn't the transcripts file be concatenated by the genome contigs (as done here)?

hiraksarkar commented 2 years ago

We don't follow the decoy principle of salmon indexing, @DongzeHE can illuminate more. But if you have a specific usecase in mind with respect to minnow I can try to include that.