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COMBINE-lab / minnow

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New conda version #5

Open hiraksarkar opened 5 years ago

hiraksarkar commented 5 years ago

We need to put a release version in conda, which aims to mitigate following problems,

  1. Overall better usability
  2. Interaction with splatter mode and alevin mode is not obvious
  3. For unexpected scenarios, we need better error messages with are descriptive rather than having undefined behavior or seg-faults.
  4. Debug messages should get removed.

Features to be added,

  1. The support for variable CB Length, UMI Length and Read Length
  2. Make TwoPaCo usable from inside minnow, removing the need for using external GFA
  3. Fewer command line options.
hiraksarkar commented 5 years ago

@annajbott I would keep a track of this to push this version.

annajbott commented 5 years ago

Cheers I'll keep an eye out

annajbott commented 5 years ago

Any updates on this?

Acribbs commented 4 years ago

Hi @hiraksarkar. Is there any update on when a new Conda release is planned?

hiraksarkar commented 4 years ago

Yes, we actually added a couple of new features and change the version completely. I am expecting to push it around second week of June.