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COMBINE-lab / oarfish

long read RNA-seq quantification
BSD 3-Clause "New" or "Revised" License
71 stars 3 forks source link

Installation issue #7

Closed katsikora closed 9 months ago

katsikora commented 9 months ago

Dear Developers,

I'm interested in trying out oarfish. I've tried installing it on our system via curl --proto '=https' --tlsv1.2 -LsSf https://github.com/COMBINE-lab/oarfish/releases/download/v0.2.0/oarfish-installer.sh | sh, but it errors out:

System glibc version (`2.17') is too old; using musl
ERROR: there isn't a package for x86_64-unknown-linux-musl-static

Our machines are running CentOS 7.

Would you be able to help me with this?

Best wishes,

Katarzyna

rob-p commented 9 months ago

Hi @katsikora,

It's also available via bioconda. Is that mechanism available in your usecase? The current linux binaries build on the most recent ubuntu, which may cause the glibc issue.

Best, Rob

P.s. github doesn't provide CentOS 7 runners afaik, since thay OS is very close to end of life (june of this year).

katsikora commented 9 months ago

Perfect, conda works for me. Thanks a bunch!

Yes, I'm aware of it and we're supposed to move to Rhel.

Best wishes, Katarzyna