Puffaligner fasta file - Githubissues

COMBINE-lab / pufferfish

An efficient index for the colored, compacted, de Bruijn graph

GNU General Public License v3.0

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Closed nayeon1994 closed 2 years ago

nayeon1994 commented 2 years ago

Hi,

Could I align FASTA file reads to reference index, using pufferfish align? Or, do I get to use only fastq files as input files?

Thank you

rob-p commented 2 years ago

Yes, things should work fine with a FASTA file. If you run into any trouble, please let us know.

--Rob