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COMBINE-lab / pufferfish

An efficient index for the colored, compacted, de Bruijn graph
GNU General Public License v3.0
107 stars 19 forks source link

xz-5.2.2.tar.gz: FAILED #38

Closed mmpust closed 1 year ago

mmpust commented 2 years ago

Installation failed with make: *** [all] Error 2 Do you have any suggestions how to solve this? Thanks

...
oneTBB-2021.5.0/test/tbbmalloc/test_malloc_regression.cpp
oneTBB-2021.5.0/test/tbbmalloc/test_malloc_shutdown_hang.cpp
oneTBB-2021.5.0/test/tbbmalloc/test_malloc_used_by_lib.cpp
oneTBB-2021.5.0/test/tbbmalloc/test_malloc_whitebox.cpp
oneTBB-2021.5.0/test/tbbmalloc/test_scalable_allocator.cpp
oneTBB-2021.5.0/third-party-programs.txt
[  3%] No update step for 'libtbb'
[  4%] No patch step for 'libtbb'
[  5%] Performing configure step for 'libtbb'
-- The CXX compiler identification is GNU 7.5.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE  
-- Checking for one of the modules 'hwloc'
-- The C compiler identification is GNU 7.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- HWLOC target HWLOC::hwloc_1_11 doesn't exist. The tbbbind target cannot be created
-- HWLOC target HWLOC::hwloc_2 doesn't exist. The tbbbind_2_0 target cannot be created
-- HWLOC target HWLOC::hwloc_2_5 doesn't exist. The tbbbind_2_5 target cannot be created
-- Configuring done
-- Generating done
-- Build files have been written to: /home/pufferfish/external/oneTBB-2021.5.0
[  6%] Performing build step for 'libtbb'
[  2%] Building CXX object src/tbb/CMakeFiles/tbb.dir/address_waiter.cpp.o
[  5%] Building CXX object src/tbb/CMakeFiles/tbb.dir/allocator.cpp.o
[  7%] Building CXX object src/tbb/CMakeFiles/tbb.dir/arena.cpp.o
[ 10%] Building CXX object src/tbb/CMakeFiles/tbb.dir/arena_slot.cpp.o
[ 12%] Building CXX object src/tbb/CMakeFiles/tbb.dir/concurrent_bounded_queue.cpp.o
[ 15%] Building CXX object src/tbb/CMakeFiles/tbb.dir/dynamic_link.cpp.o
[ 17%] Building CXX object src/tbb/CMakeFiles/tbb.dir/exception.cpp.o
[ 20%] Building CXX object src/tbb/CMakeFiles/tbb.dir/governor.cpp.o
[ 23%] Building CXX object src/tbb/CMakeFiles/tbb.dir/global_control.cpp.o
[ 25%] Building CXX object src/tbb/CMakeFiles/tbb.dir/itt_notify.cpp.o
[ 28%] Building CXX object src/tbb/CMakeFiles/tbb.dir/main.cpp.o
[ 30%] Building CXX object src/tbb/CMakeFiles/tbb.dir/market.cpp.o
[ 33%] Building CXX object src/tbb/CMakeFiles/tbb.dir/misc.cpp.o
[ 35%] Building CXX object src/tbb/CMakeFiles/tbb.dir/misc_ex.cpp.o
[ 38%] Building CXX object src/tbb/CMakeFiles/tbb.dir/observer_proxy.cpp.o
[ 41%] Building CXX object src/tbb/CMakeFiles/tbb.dir/parallel_pipeline.cpp.o
[ 43%] Building CXX object src/tbb/CMakeFiles/tbb.dir/private_server.cpp.o
[ 46%] Building CXX object src/tbb/CMakeFiles/tbb.dir/profiling.cpp.o
[ 48%] Building CXX object src/tbb/CMakeFiles/tbb.dir/rml_tbb.cpp.o
[ 51%] Building CXX object src/tbb/CMakeFiles/tbb.dir/rtm_mutex.cpp.o
[ 53%] Building CXX object src/tbb/CMakeFiles/tbb.dir/rtm_rw_mutex.cpp.o
[ 56%] Building CXX object src/tbb/CMakeFiles/tbb.dir/semaphore.cpp.o
[ 58%] Building CXX object src/tbb/CMakeFiles/tbb.dir/small_object_pool.cpp.o
[ 61%] Building CXX object src/tbb/CMakeFiles/tbb.dir/task.cpp.o
[ 64%] Building CXX object src/tbb/CMakeFiles/tbb.dir/task_dispatcher.cpp.o
[ 66%] Building CXX object src/tbb/CMakeFiles/tbb.dir/task_group_context.cpp.o
[ 69%] Building CXX object src/tbb/CMakeFiles/tbb.dir/version.cpp.o
[ 71%] Building CXX object src/tbb/CMakeFiles/tbb.dir/queuing_rw_mutex.cpp.o
[ 74%] Linking CXX shared library ../../gnu_7.5_cxx14_64_release/libtbb.so
[ 74%] Built target tbb
[ 76%] Building CXX object src/tbbmalloc/CMakeFiles/tbbmalloc.dir/backend.cpp.o
[ 79%] Building CXX object src/tbbmalloc/CMakeFiles/tbbmalloc.dir/backref.cpp.o
[ 82%] Building CXX object src/tbbmalloc/CMakeFiles/tbbmalloc.dir/frontend.cpp.o
[ 84%] Building CXX object src/tbbmalloc/CMakeFiles/tbbmalloc.dir/large_objects.cpp.o
[ 87%] Building CXX object src/tbbmalloc/CMakeFiles/tbbmalloc.dir/tbbmalloc.cpp.o
[ 89%] Building CXX object src/tbbmalloc/CMakeFiles/tbbmalloc.dir/__/tbb/itt_notify.cpp.o
[ 92%] Linking C shared library ../../gnu_7.5_cxx14_64_release/libtbbmalloc.so
[ 92%] Built target tbbmalloc
[ 94%] Building CXX object src/tbbmalloc_proxy/CMakeFiles/tbbmalloc_proxy.dir/function_replacement.cpp.o
[ 97%] Building CXX object src/tbbmalloc_proxy/CMakeFiles/tbbmalloc_proxy.dir/proxy.cpp.o
[100%] Linking CXX shared library ../../gnu_7.5_cxx14_64_release/libtbbmalloc_proxy.so
[100%] Built target tbbmalloc_proxy
[  7%] Performing install step for 'libtbb'
Consolidate compiler generated dependencies of target tbb
[ 74%] Built target tbb
Consolidate compiler generated dependencies of target tbbmalloc
[ 92%] Built target tbbmalloc
Consolidate compiler generated dependencies of target tbbmalloc_proxy
[100%] Built target tbbmalloc_proxy
Install the project...
-- Install configuration: "Release"
-- Installing: /home/pufferfish/external/install/include
-- Installing: /home/pufferfish/external/install/include/tbb
-- Installing: /home/pufferfish/external/install/include/tbb/scalable_allocator.h
-- Installing: /home/pufferfish/external/install/include/tbb/blocked_range2d.h
-- Installing: /home/pufferfish/external/install/include/tbb/task_scheduler_observer.h
-- Installing: /home/pufferfish/external/install/include/tbb/collaborative_call_once.h
-- Installing: /home/pufferfish/external/install/include/tbb/null_mutex.h
-- Installing: /home/pufferfish/external/install/include/tbb/parallel_scan.h
-- Installing: /home/pufferfish/external/install/include/tbb/blocked_rangeNd.h
-- Installing: /home/pufferfish/external/install/include/tbb/concurrent_map.h
-- Installing: /home/pufferfish/external/install/include/tbb/concurrent_queue.h
-- Installing: /home/pufferfish/external/install/include/tbb/flow_graph_abstractions.h
-- Installing: /home/pufferfish/external/install/include/tbb/global_control.h
-- Installing: /home/pufferfish/external/install/include/tbb/combinable.h
-- Installing: /home/pufferfish/external/install/include/tbb/null_rw_mutex.h
-- Installing: /home/pufferfish/external/install/include/tbb/concurrent_hash_map.h
-- Installing: /home/pufferfish/external/install/include/tbb/blocked_range.h
-- Installing: /home/pufferfish/external/install/include/tbb/parallel_sort.h
-- Installing: /home/pufferfish/external/install/include/tbb/concurrent_unordered_set.h
-- Installing: /home/pufferfish/external/install/include/tbb/parallel_for.h
-- Installing: /home/pufferfish/external/install/include/tbb/task_group.h
-- Installing: /home/pufferfish/external/install/include/tbb/cache_aligned_allocator.h
-- Installing: /home/pufferfish/external/install/include/tbb/concurrent_set.h
-- Installing: /home/pufferfish/external/install/include/tbb/spin_rw_mutex.h
-- Installing: /home/pufferfish/external/install/include/tbb/parallel_reduce.h
-- Installing: /home/pufferfish/external/install/include/tbb/flow_graph.h
-- Installing: /home/pufferfish/external/install/include/tbb/concurrent_lru_cache.h
-- Installing: /home/pufferfish/external/install/include/tbb/queuing_rw_mutex.h
-- Installing: /home/pufferfish/external/install/include/tbb/task_arena.h
-- Installing: /home/pufferfish/external/install/include/tbb/concurrent_vector.h
-- Installing: /home/pufferfish/external/install/include/tbb/tbbmalloc_proxy.h
-- Installing: /home/pufferfish/external/install/include/tbb/blocked_range3d.h
-- Installing: /home/pufferfish/external/install/include/tbb/profiling.h
-- Installing: /home/pufferfish/external/install/include/tbb/parallel_invoke.h
-- Installing: /home/pufferfish/external/install/include/tbb/parallel_pipeline.h
-- Installing: /home/pufferfish/external/install/include/tbb/task.h
-- Installing: /home/pufferfish/external/install/include/tbb/concurrent_unordered_map.h
-- Installing: /home/pufferfish/external/install/include/tbb/info.h
-- Installing: /home/pufferfish/external/install/include/tbb/tick_count.h
-- Installing: /home/pufferfish/external/install/include/tbb/parallel_for_each.h
-- Installing: /home/pufferfish/external/install/include/tbb/spin_mutex.h
-- Installing: /home/pufferfish/external/install/include/tbb/partitioner.h
-- Installing: /home/pufferfish/external/install/include/tbb/version.h
-- Installing: /home/pufferfish/external/install/include/tbb/tbb.h
-- Installing: /home/pufferfish/external/install/include/tbb/queuing_mutex.h
-- Installing: /home/pufferfish/external/install/include/tbb/tbb_allocator.h
-- Installing: /home/pufferfish/external/install/include/tbb/memory_pool.h
-- Installing: /home/pufferfish/external/install/include/tbb/enumerable_thread_specific.h
-- Installing: /home/pufferfish/external/install/include/tbb/concurrent_priority_queue.h
-- Installing: /home/pufferfish/external/install/include/oneapi
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/scalable_allocator.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/blocked_range2d.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/task_scheduler_observer.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/collaborative_call_once.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/null_mutex.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/parallel_scan.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/blocked_rangeNd.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/concurrent_map.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/concurrent_queue.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/flow_graph_abstractions.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/global_control.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/combinable.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/null_rw_mutex.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/concurrent_hash_map.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/blocked_range.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/parallel_sort.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/concurrent_unordered_set.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/parallel_for.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_utils.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_small_object_pool.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_rtm_mutex.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_machine.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_indexer_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_aligned_space.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_types_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_task.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_exception.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_pipeline_filters.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_template_helpers.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_node_set_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_nodes_deduction.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_item_buffer_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_cache_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_config.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_segment_table.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_task_handle.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_concurrent_unordered_base.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_mutex_common.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_allocator_traits.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_export.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_node_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_hash_compare.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_rtm_rw_mutex.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_pipeline_filters_deduction.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_intrusive_list_node.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_join_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_waitable_atomic.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_range_common.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_aggregator.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_assert.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_tagged_buffer_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_namespace_injection.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_containers_helpers.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_concurrent_skip_list.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_concurrent_queue_base.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_string_resource.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_node_handle.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_trace_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_flow_graph_body_impl.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/detail/_scoped_lock.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/task_group.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/cache_aligned_allocator.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/concurrent_set.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/mutex.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/spin_rw_mutex.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/parallel_reduce.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/rw_mutex.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/flow_graph.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/concurrent_lru_cache.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/queuing_rw_mutex.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/task_arena.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/concurrent_vector.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/tbbmalloc_proxy.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/blocked_range3d.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/profiling.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/parallel_invoke.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/parallel_pipeline.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/task.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/concurrent_unordered_map.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/info.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/tick_count.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/parallel_for_each.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/spin_mutex.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/partitioner.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/version.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/queuing_mutex.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/tbb_allocator.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/memory_pool.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/enumerable_thread_specific.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb/concurrent_priority_queue.h
-- Installing: /home/pufferfish/external/install/include/oneapi/tbb.h
-- Installing: /home/pufferfish/external/install/lib/cmake/TBB/TBBTargets.cmake
-- Installing: /home/pufferfish/external/install/lib/cmake/TBB/TBBTargets-release.cmake
-- Installing: /home/pufferfish/external/install/lib/cmake/TBB/TBBConfig.cmake
-- Installing: /home/pufferfish/external/install/lib/cmake/TBB/TBBConfigVersion.cmake
-- Installing: /home/pufferfish/external/install/share/doc/TBB/README.md
-- Installing: /home/pufferfish/external/install/lib/libtbb.so.12.5
-- Installing: /home/pufferfish/external/install/lib/libtbb.so.12
-- Installing: /home/pufferfish/external/install/lib/libtbb.so
-- Installing: /home/pufferfish/external/install/lib/pkgconfig/tbb.pc
-- Installing: /home/pufferfish/external/install/lib/libtbbmalloc.so.2.5
-- Installing: /home/pufferfish/external/install/lib/libtbbmalloc.so.2
-- Installing: /home/pufferfish/external/install/lib/libtbbmalloc.so
-- Installing: /home/pufferfish/external/install/lib/libtbbmalloc_proxy.so.2.5
-- Installing: /home/pufferfish/external/install/lib/libtbbmalloc_proxy.so.2
-- Set runtime path of "/home/pufferfish/external/install/lib/libtbbmalloc_proxy.so.2.5" to ""
-- Installing: /home/pufferfish/external/install/lib/libtbbmalloc_proxy.so
[  7%] Performing reconfigure step for 'libtbb'
CC: gcc
CC version: 
Detected non-ARM host. Setting USE_ARM to false.
version: 1.0.0
Top-level source directory variable not set externally; setting it to /home/pufferfish
setting -DHAVE_NUMERIC_LIMITS128
-- Could NOT find Jemalloc (missing: JEMALLOC_LIBRARY JEMALLOC_INCLUDE_DIR) 
-- Could NOT find TBB (missing: TBB_DIR)
Build system will fetch and build Intel Threading Building Blocks
==================================================================
fetching oneAPI::TBB : TBB_SOURCE_DIR = /home/pufferfish/external/oneTBB-2021.5.0, TBB_INSTALL_DIR = /home/pufferfish/external/install
-- Could NOT find LibLZMA (missing: LIBLZMA_LIBRARY LIBLZMA_INCLUDE_DIR LIBLZMA_HAS_AUTO_DECODER LIBLZMA_HAS_EASY_ENCODER LIBLZMA_HAS_LZMA_PRESET) 
Will attempt to fetch and build liblzma
=======================================
-- Could NOT find BZip2 (missing: BZIP2_LIBRARIES BZIP2_INCLUDE_DIR) 
Will attempt to fetch and build libbz2
=======================================
TBB_INCLUDE_DIRS = /home/pufferfish/external/install/include
TBB_LIBRARY_DIRS = /home/pufferfish/external/install/lib
TBB_INSTALL_DIR = /home/pufferfish/external/install
TBB_LIBRARIES = /home/pufferfish/external/install/lib/libtbbmalloc.so;/home/pufferfish/external/install/lib/libtbbmalloc_proxy.so;/home/pufferfish/external/install/lib/libtbb.so
-- setting COMPACT_VECTOR_DIR for graphdump to be /home/pufferfish/external/twopaco/graphdump
adding externally-fetched tbb as dependency of twopaco
add library puffer : PufferfishIndexer.cpp;PufferfishBaseIndex.cpp;PufferfishIndex.cpp;PufferfishSparseIndex.cpp;PufferfishLossyIndex.cpp;edlib.cpp;Util.cpp;rank9sel.cpp;rank9b.cpp;PufferfishValidate.cpp;PufferfishStats.cpp;PufferfishTestLookup.cpp;PufferfishExamine.cpp;PufferfishKmerQuery.cpp;FastxParser.cpp;PufferfishBinaryGFAReader.cpp;PufferFS.cpp;xxhash.c;FixFasta.cpp;MemCollector.cpp;MemChainer.cpp;PuffAligner.cpp;PufferfishAligner.cpp;RefSeqConstructor.cpp;metro/metrohash64.cpp
adding /home/pufferfish/external/twopaco/graphdump to include path for libpuffer
Building extra components
-- Configuring done
-- Generating done
-- Build files have been written to: /home/pufferfish/build
[  8%] Completed 'libtbb'
[  8%] Built target libtbb
[  9%] Creating directories for 'liblzma'
[  9%] Performing download step for 'liblzma'
xz-5.2.2.tar.gz: FAILED
sha256sum: WARNING: 1 computed checksum did NOT match
xz-5.2.2.tar.gz did not match expected SHA256! Exiting.
CMakeFiles/liblzma.dir/build.make:97: recipe for target 'liblzma-prefix/src/liblzma-stamp/liblzma-download' failed
make[2]: *** [liblzma-prefix/src/liblzma-stamp/liblzma-download] Error 1
CMakeFiles/Makefile2:238: recipe for target 'CMakeFiles/liblzma.dir/all' failed
make[1]: *** [CMakeFiles/liblzma.dir/all] Error 2
Makefile:155: recipe for target 'all' failed
make: *** [all] Error 2
rob-p commented 2 years ago

Hi @mmpust,

For some reason, the checksum of the xz library source code that we pull in during build changed upstream. We validate the checksum of external dependencies, which caused the build to fail in your case. I've updated this in the CMake file. Can you try pulling the latest source and building again (in a clean build directory)?

Thanks, Rob

DepuydtLore commented 1 year ago

Good evening.

Would it be possible that this issue is occurring again?

Kind regards Lore