Closed hermidalc closed 1 year ago
At NCBI each genome FASTA can have multiple entries, generally the assembly plus unplaced additional contigs. Would is be more efficient to merge these into one FASTA entry per genome before index and align?
index
align
This is very likely not a factor in performance, since it only adds additional "colors" to the Pufferfish index, so no need to answer this question
At NCBI each genome FASTA can have multiple entries, generally the assembly plus unplaced additional contigs. Would is be more efficient to merge these into one FASTA entry per genome before
index
andalign
?