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COMBINE-lab / salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
https://combine-lab.github.io/salmon
GNU General Public License v3.0
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Documentation lacking long reads (ont) information #811

Open Lucas-Servi opened 2 years ago

Lucas-Servi commented 2 years ago

Since v1.5.0 you added a long read parameter to the command line. It would be awesome if the --ont flag was added to the documentation, I had to come to the changelog to look for it :).

As always, thanks for SALMON, amazing software.

rob-p commented 2 years ago

Hi @Lucas-Servi,

Great point! We'll work on getting some more info on --ont into the documentation. We actually wrote up a blog post about the feature flag here where you can get more info in the mean time (https://combine-lab.github.io/salmon-tutorials/2021/ont-long-read-quantification/).

Best, Rob