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COVID-IWG / epimargin

networked, stochastic SIRD epidemiological model with Bayesian parameter estimation and policy scenario comparison tools
https://www.adaptivecontrol.org/
MIT License
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Run failure because of a dependency (`semver`) has removed functions #122

Closed dilawar closed 3 years ago

dilawar commented 3 years ago 
[centos@ip-172-26-6-166 karnataka (joss_lint_errors)]$ python3 age_rt.py 
WARNING (theano.tensor.blas): Using NumPy C-API based implementation for BLAS functions.
Traceback (most recent call last):
  File "/home/centos/Work/FORKES/epimargin/studies/karnataka/age_rt.py", line 3, in <module>
    from epimargin.estimators import analytical_MPVS
  File "/home/centos/Work/FORKES/epimargin/epimargin/estimators.py", line 7, in <module>
    import pymc3 as pm
  File "/home/centos/.local/lib/python3.9/site-packages/pymc3-3.11.2-py3.9.egg/pymc3/__init__.py", line 34, in <module>
    if not semver.match(theano.__version__, ">=1.1.2"):
AttributeError: module 'semver' has no attribute 'match'

The package semver has deprecated/removed the match function (https://github.com/python-semver/python-semver/issues/236).

dilawar commented 3 years ago

This has been patched in pymc3(https://github.com/pymc-devs/pymc3/issues/4546).

dilawar commented 3 years ago

pinning semver==2.12.0 fixed the issue. It is related to upstream dependencies.