COVID-IWG epimargin issues

COVID-IWG / epimargin

networked, stochastic SIRD epidemiological model with Bayesian parameter estimation and policy scenario comparison tools

https://www.adaptivecontrol.org/

MIT License

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issues

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centralize covid19india API functions and migration matrix functions in adaptive.etl package

#59 satejsoman closed 4 years ago
0
reverse convolve onset distribution and account for right-censoring in case time series

#58 satejsoman opened 4 years ago
0
finish nct study

#57 satejsoman closed 4 years ago
0
add PID Controller policy implementation

#56 satejsoman closed 4 years ago
0
add travis config

#55 satejsoman closed 4 years ago
0
Implement gamma prior estimator

#54 satejsoman closed 4 years ago
0
automatically check if COVID19India API has new data

#53 satejsoman opened 4 years ago
1
Create testgcp.py

#52 manasip5 closed 4 years ago
0
Etl/refactor nested indices

#51 ceilingloft closed 4 years ago
1
updated india districts study to use 2011 migration matrix

#50 ceilingloft closed 4 years ago
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added raw_data5 and raw_data6 to india districts api study

#49 ceilingloft closed 4 years ago
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use bootstrap aggregation formulae to go from simulation range to proper confidence intervals

#48 satejsoman opened 4 years ago
0
run existing studies in CI on every commit

#47 satejsoman closed 4 years ago
0
Fix India district level study

#46 satejsoman closed 4 years ago
0
account for mortality in b(t) calculations

#45 satejsoman opened 4 years ago
0
add data recency note to all simulations

#44 satejsoman opened 4 years ago
0
empirical lockdown implementations

#43 satejsoman closed 4 years ago
0
WIP Colabifying Bihar Study

#42 nmarchio closed 4 years ago
0
clean up bihar to use as template

#41 satejsoman closed 4 years ago
0
use covid19india.org data to estimate state-level pre-lockdown mobility in state-level studies

#40 satejsoman opened 4 years ago
0
refactor out column standardization to adaptive.utils

#39 satejsoman opened 4 years ago
0
add assert statements in ETL code to error when assumptions not met

#38 satejsoman opened 4 years ago
0
Studies/maharashtra-set-up

#37 ceilingloft closed 4 years ago
0
WIP - colab mods

#36 nmarchio closed 4 years ago
1
clean up Bihar studies to use as template for MH

#35 satejsoman closed 4 years ago
0
move log_delta functions to estimators

#34 satejsoman closed 4 years ago
1
Add loess smoothing option

#33 satejsoman closed 4 years ago
0
Etl/standardise-column-headers

#32 ceilingloft closed 4 years ago
0
Etl/download india districts data

#31 ceilingloft closed 4 years ago
0
Properly handle v4 "num cases" field in covid19india.org schema

#30 satejsoman closed 4 years ago
0
add phased-in urban-rural migration

#29 satejsoman opened 4 years ago
0
Add files via upload

#28 nmarchio closed 4 years ago
0
Add files via upload

#27 nmarchio closed 4 years ago
0
handle v5 of the covid19india.org API

#26 satejsoman closed 4 years ago
0
Add migration spike simulation for Bihar

#25 satejsoman closed 4 years ago
0
Refactor India district level studies to deal with v3/v4 data API from covid19india.org

#24 satejsoman closed 4 years ago
0
download covid19india.org data in india_districts ETL

#23 satejsoman closed 4 years ago
0
refactor ETL code to use nested indices instead of passing around Dict[str, pd.DataFrame] objects

#22 satejsoman closed 4 years ago
1
check how many anomalies fall on a monday

#21 satejsoman opened 4 years ago
0
calculate log deltas for cases only where confirmed[i] > 0

#20 satejsoman closed 4 years ago
1
backtest estimators on historical data

#19 satejsoman opened 4 years ago
0
back out case onset using given infectious period and time difference between (I, {R, D})

#18 satejsoman opened 4 years ago
0
add LOESS smoothing option to estimators

#17 satejsoman closed 4 years ago
1
check spy() and SVD of empirical migration matrix to make sure intra-state flows dominate inter-state flows

#16 satejsoman opened 4 years ago
0
regress branching factor on dI/dt and district-level fixed effects

#15 satejsoman opened 4 years ago
0
show variance in simulation on SIRD curve plots

#14 satejsoman opened 4 years ago
0
add AUC and TTC evaluation metrics over n simulations

#13 satejsoman opened 4 years ago
0
make Model a subclass of ModelUnit so we can arbitrarily nest geographies

#12 satejsoman closed 4 years ago
1
vary confirmed:true prevalence ratio

#11 satejsoman closed 4 years ago
0
use empirical estimates of effective reproductive number to back out contact rate

#10 satejsoman opened 4 years ago
0

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