fix: improve implicit qubit permutations warning

[CalMacCQ]

Description

Added the change from #412 back in again with a boolean flag to ensure that unhelpful warnings aren't generated when using AerBackend with optimisation level 2

See discusssion in #411

Driveby: fix invalid table of compilation passes (see df0cda3)

Related issues

closes #411

Checklist

• [x] I have performed a self-review of my code.
• [ ] I have commented hard-to-understand parts of my code.
• [x] I have made corresponding changes to the public API documentation.
• [x] I have added tests that prove my fix is effective or that my feature works.
• [x] I have updated the changelog with any user-facing changes.

[CalMacCQ]

Sorry for commit spam. I think the linting settings were broken in my IDE.