Closed haberlmatt closed 4 years ago
Ubuntu 18.04 uses a newer version of octave (4.2 I believe). You could try a newer version of the hdf5oct libraryfrom this repo:
https://github.com/stegro/hdf5oct
The commit being used is b047e6e611e874b02740e7465f5d139e74f9765f and there are a couple commits after this one. See the basic_cloudformation.json file on how the above commit is being downloaded.
Hi,
What's the number of b047e6e611e874b02740e7465f5d139e74f9765f,and how do you solve it?
Starting Training data Preprocessing
Training Image Path:
./most/soma/train/images
Reading file: ./most/soma/train/images/x.001.png
Reading file: ./most/soma/train/images/x.002.png
........................
Verifying images
Reading file: ./most/soma/train/labels/x.001.png
Reading file: ./most/soma/train/labels/x.002.png
...........................
Verifying labels
Checking image dimensions
Augmenting training data 1-8 and 9-16
Create variation 1 and 9
Saving: ./soma_augmented/training_full_stacks_v1.h5
error: h5write: support for HDF5 IO was unavailable or disabled when Octave was built
error: called from
PreprocessTrainingData at line 96 column 5
machine
No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 18.04.3 LTS Release: 18.04 Codename: bionic
octave version
GNU Octave, version 4.2.2
hdf5 version
Package: libhdf5-dev Status: install ok installed Priority: optional Section: libdevel Installed-Size: 11294 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> Architecture: amd64 Source: hdf5 Version: 1.10.0-patch1+docs-4
This bug is only concerning local installs with CDeep3M Version 1, as you mentioned you are using the Colab installation of CDeep3M2 this issue is resolved
thanks, I will try it.
When doing local installs on Ubuntu 18.04LTE an error shows up as: << error: h5write: support for HDF5 IO was unavailable or disabled when Octave was built >> everything works fine with Ubuntu 16