Results on bovine gut dataset

[eaasna]

The bovine gut dataset could be taken as the medium sized datasets. Results should be precalculated on it. Need a TaxSBP clustering step which could be followed by Yara distributed read mapping.

[eaasna]

Query reads:

• 180 000 reads
• 20MB
• DNA
• variable length ca 100b

Reference:

• 670 000 (tiny) reference sequences
• 270MB
• protein

Distributed read mapping steps:

1. cluster reference with taxSBP and create files with names 1.fasta, 2.fasta etc
2. build IBF
3. create FM index for each ref seq
4. map reads

[eaasna]

Can't use this dataset because reference file does not contain NCBI ID's