I'm having the following problem: bwtool summary works perfectly well with one .bed file, and gives 'segmentation fault' with another. Another file just has different gene coordinates, but the gene names and number of lines is the same. Both .bed files were generated from hg38.annotation.gtf.
Here is the command I'm running:
bwtool summary numerator_EI.bed RPB1_shControl_1.bigWig out.txt -header -with-sum
The files are attached: tool works okay with numerator3_PI.bed, but not with numerator_EI.bed.
Would appreciate your help with this issue,
Thanks in advance.
Hello,
I'm having the following problem: bwtool summary works perfectly well with one .bed file, and gives 'segmentation fault' with another. Another file just has different gene coordinates, but the gene names and number of lines is the same. Both .bed files were generated from hg38.annotation.gtf. Here is the command I'm running: bwtool summary numerator_EI.bed RPB1_shControl_1.bigWig out.txt -header -with-sum The files are attached: tool works okay with numerator3_PI.bed, but not with numerator_EI.bed. Would appreciate your help with this issue, Thanks in advance.
bed files.zip