simplify star 2 pass alignment

CRG-CNAG / CalliNGS-NF

GATK RNA-Seq Variant Calling in Nextflow

Mozilla Public License 2.0

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simplify star 2 pass alignment #12

Closed alexyfyf closed 3 years ago

alexyfyf commented 4 years ago

Fix issues: picard.jar not found #10 Update new 2-pass mode in STAR alignment (STAR > 2.4.1)

pditommaso commented 3 years ago

I've completely missed this PR and the pipeline has been rewritten using DSL2 syntax. Therefore it's not immediate to merge this PR. I'm closing it without merging.