Whether do not generate star index if provide directly?

CRG-CNAG / CalliNGS-NF

GATK RNA-Seq Variant Calling in Nextflow

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Whether do not generate star index if provide directly? #20

Open RyanYip-Kat opened 3 years ago

whtns commented 3 years ago

Not sure of OP's intent. It would be very helpful to be able to skip STAR genome indexing if there is already a local STAR index. Could this be provided as a command line argument?