This pull request is to try to fix #26. If you change the method to the one recommended in the Star manual, you will be able to reduce the execution time.
The output files were compared before and after the change.
file
Is it the same before and after the change?
final.vcf
identical except for the timestamp.
commonSNPs.diff.sites_in_files
identical.
known_snps.vcf.gz
identical except for the timestamp.
ASE.tsv
identical.
AF.histogram.pdf
has a binary difference, but the output looks identical.
known_snps.vcf.gz.tbi
has a binary difference.
I am not sure if such a simple change of options is enough. This is just a suggestion.
I would appreciate it if you could review it.
kojix2
commented
3 years ago
Hi CalliNGS-NF developers and @lucacozzuto .
This pull request is to try to fix #26. If you change the method to the one recommended in the Star manual, you will be able to reduce the execution time. The output files were compared before and after the change.
final.vcfcommonSNPs.diff.sites_in_filesknown_snps.vcf.gzASE.tsvAF.histogram.pdfknown_snps.vcf.gz.tbiI am not sure if such a simple change of options is enough. This is just a suggestion. I would appreciate it if you could review it.
Thank you.