'ebpp_genes_sig' not found

CRI-iAtlas / ImmuneSubtypeClassifier

An R package for classification of immune subtypes, in cancer, using gene expression data.

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'ebpp_genes_sig' not found #5

Closed andrewelamb closed 4 years ago

andrewelamb commented 4 years ago

Hi Dave, I'm using this commit: 30e6215

and getting this error:

calls <- ImmuneSubtypeClassifier::callEnsemble(input_matrix)

Error in geneMatch(X, geneids) : object 'ebpp_genes_sig' not found Calls: -> geneMatch In addition: Warning messages: 1: In data("subtype_caller_model") : data set ‘subtype_caller_model’ not found 2: In data("ensemble_model") : data set ‘ensemble_model’ not found 3: In data(ebpp_gene) : data set ‘ebpp_gene’ not found Execution halted

Gibbsdavidl commented 4 years ago

Well that's weird.

What sort of environment is this running in? Is it in a docker?

Do you think it's caused from not loading the library? These are brought into the environment with data() calls...

andrewelamb commented 4 years ago

Loading the library fixed that, thanks!