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CRI-iAtlas / iatlas-app

R Shiny app for CRI iAtlas, an interactive web portal for exploring immuno-oncology data. (iAtlas portal 2022 and beyond)
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Accommodate tumor cell receptor ligand interactions in cytokine network display #9

Open vthorsson opened 5 years ago

vthorsson commented 5 years ago

Allow tumor cells to be included in extracellular network module if results are available

heimannch commented 4 years ago

Do we have an annotation of all receptors and ligands that interact with tumor cells (perhaps from the cell-image module)?

vthorsson commented 4 years ago

Indeed, from the cell-image diagram we have some examples of these to work from. The attached can serve as an example file to start from (text "Tumor_cell" can be changed to whatever is most appropriate for input )

CellImage_InteractionPairs.tsv.gz