CRI-iAtlas / iatlas-workflows

cwl workflows for public tools
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Add Immunarch workflow #24

Closed BrunoGrandePhD closed 4 years ago

BrunoGrandePhD commented 4 years ago

For Immunarch, this PR includes:

Additionally, I updated the md5sum_checker CWL tool to parameterize the status output file name. The default is what it used to be, so this change should be backwards-compatible. This way, there isn't a clash when running the checker workflow on PCAWG and TCGA in parallel.