JSON example scatters across the two examples (PCAWG and TCGA)
Additionally, I updated the md5sum_checker CWL tool to parameterize the status output file name. The default is what it used to be, so this change should be backwards-compatible. This way, there isn't a clash when running the checker workflow on PCAWG and TCGA in parallel.
For Immunarch, this PR includes:
Additionally, I updated the
md5sum_checker
CWL tool to parameterize the status output file name. The default is what it used to be, so this change should be backwards-compatible. This way, there isn't a clash when running the checker workflow on PCAWG and TCGA in parallel.