CRI-iAtlas / iatlasGraphQLClient

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`iatlasGraphQLClient::query_features()`returning invalid values for `method_tag` column #18

Closed heimannch closed 8 months ago

heimannch commented 8 months ago

Staging:

> classes <- iatlasGraphQLClient::query_features()
> head(classes)
# A tibble: 6 × 6
  name                     display             class          order unit  method_tag
  <chr>                    <chr>               <chr>          <int> <chr> <chr>     
1 Bindea_aDC               aDC                 TCGA_Germline     NA NA    NA        
2 AS                       Aneuploidy Score    DNA Alteration     5 NA    5         
3 Senbabaoglu_Angiogenesis Angiogenesis        TCGA_Germline     NA NA    NA        
4 Senbabaoglu_APM1         APM1                TCGA_Germline     NA NA    NA        
5 Senbabaoglu_APM2         APM2                TCGA_Germline     NA NA    NA        
6 Wolf_B_cell_PCA_16704732 B cell PCA 16704732 TCGA_Germline     NA NA    NA  

Production:

> classes <- iatlasGraphQLClient::query_features()
> head(classes)
# A tibble: 6 × 6
  name                     display          class          order unit  method_tag
  <chr>                    <chr>            <chr>          <int> <chr> <chr>     
1 Bindea_aDC               aDC              TCGA_Germline     NA NA    NA        
2 age_at_diagnosis         Age At Diagnosis Clinical          NA Year  NA        
3 AS                       Aneuploidy Score DNA Alteration     5 NA    CNVR-DDR  
4 Senbabaoglu_Angiogenesis Angiogenesis     TCGA_Germline     NA NA    NA        
5 Senbabaoglu_APM1         APM1             TCGA_Germline     NA NA    NA        
6 Senbabaoglu_APM2         APM2             TCGA_Germline     NA NA    NA