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query_gene_nanostring_expression() doesn't return results for Chen_CanDisc_2016 dataset #6

Closed heimannch closed 2 years ago

heimannch commented 2 years ago

The function iatlasGraphQLClient::query_gene_nanostring_expression() does not return results for samples from the Chen dataset.

Below some examples of queries I attempted:

x <- iatlasGraphQLClient::query_gene_nanostring_expression(entrez = 1493) #no entry for Chen_CanDisc_2016

x <- iatlasGraphQLClient::query_gene_nanostring_expression(samples = "Chen_CanDisc_2016-p18-p18_pre")
andrewelamb commented 2 years ago

@heimannch It doesn't look like that particular sample isn't in the database at all:

nrow(query_samples(samples = "Chen_CanDisc_2016-p18-p18_pre")) [1] 0 If it's not in as a sample it won't be in other tables.

heimannch commented 2 years ago

I see. Yeah, indeed there is a mismatch in the samples names for this dataset. I updated the file in Synapse, hopefully it will solve this issue. Thanks for the clarification!