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CRI-iAtlas / shiny-iatlas

An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
https://www.cri-iatlas.org
Apache License 2.0
47 stars 12 forks source link

data/io folder is missing #208

Closed daxiagithub closed 3 years ago

daxiagithub commented 3 years ago

Here is the error message I got:

> shiny::runApp()
`summarise()` regrouping output by 'ParticipantBarcode' (override with `.groups` argument)
 Error in normalizePath(path.expand(path), winslash, mustWork) : 
  path[1]="data/io/fmx_io.feather": The system cannot find the path specified

Thanks!

vthorsson commented 3 years ago

Thanks for the error report @daxiagithub . @heimannch would you be able to take an initial look at this? (I can see a somewhat similar path error on my local install )

heimannch commented 3 years ago

@daxiagithub thanks for bringing this to our attention. I just added the files, let us know if you have any comments or run into any issue!

daxiagithub commented 3 years ago

Thank you very much, @vthorsson and @heimannch ! The app is running now. You may want to update your 1.4.0 release file too.

A related question. Is "shiny-iatlas" the default deployment now? What about "iatlas-app" + "iatlas-data" version? What are the differences between the two?

heimannch commented 3 years ago

Glad to know you were able to run the code locally, @daxiagithub!

And yes, shiny-iatlas is the current version deployed at https://isb-cgc.shinyapps.io/shiny-iatlas/. iatlas-app contains the code of an upcoming release of the app, with new and improved features (that also hopefully will avoid the type of issue that you just reported!)

I will close this issue, but please feel free to send us any question or comments.