CRPropa is a public astrophysical simulation framework for propagating extraterrestrial ultra-high energy particles. https://crpropa.github.io/CRPropa3/
I ran into a Segmentation Fault while installing CRPropa.
System Information:
Operating system: macOS Monterey 12.4
Laptop
Python version: 3.10.5
Swig version: 4.0.2
Cmake version: 3.20.1
Here is the test failing:
Start 1: testCore
1/20 Test #1: testCore .......................... Passed 0.04 sec
Start 2: testVector3
2/20 Test #2: testVector3 ....................... Passed 0.02 sec
Start 3: testModuleList
3/20 Test #3: testModuleList .................... Passed 0.02 sec
Start 4: testMagneticField
4/20 Test #4: testMagneticField ................. Passed 0.02 sec
Start 5: testTurbulentField
5/20 Test #5: testTurbulentField ................ Passed 0.13 sec
Start 6: testAdvectionField
6/20 Test #6: testAdvectionField ................ Passed 0.02 sec
Start 7: testDensity
7/20 Test #7: testDensity ....................... Passed 0.02 sec
Start 8: testDINT
8/20 Test #8: testDINT .......................... Passed 0.03 sec
Start 9: testPropagation
9/20 Test #9: testPropagation ................... Passed 0.02 sec
Start 10: testBreakCondition
10/20 Test #10: testBreakCondition ................ Passed 0.02 sec
Start 11: testInteraction
11/20 Test #11: testInteraction ................... Passed 31.15 sec
Start 12: testSource
12/20 Test #12: testSource ........................ Passed 0.10 sec
Start 13: testOutput
13/20 Test #13: testOutput ........................ Passed 0.04 sec
Start 14: testFunctionalGroups
14/20 Test #14: testFunctionalGroups .............. Passed 0.02 sec
Start 15: testAdiabaticCooling
15/20 Test #15: testAdiabaticCooling .............. Passed 0.02 sec
Start 16: testGalacticMagneticLens
16/20 Test #16: testGalacticMagneticLens .......... Passed 0.11 sec
Start 17: testMagneticLensPythonInterface
17/20 Test #17: testMagneticLensPythonInterface ...***Exception: SegFault 0.17 sec
Start 18: testSimulationExecution
18/20 Test #18: testSimulationExecution ........... Passed 2.30 sec
Start 19: testDiffusionSDE
19/20 Test #19: testDiffusionSDE .................. Passed 1.69 sec
Start 20: testPythonExtension
20/20 Test #20: testPythonExtension ............... Passed 0.18 sec
95% tests passed, 1 tests failed out of 20
Total Test time (real) = 36.15 sec
The following tests FAILED:
17 - testMagneticLensPythonInterface (SEGFAULT)
Errors while running CTest
Output from these tests are in: /Users/angelinapartenheimer/wipac_research/crpropa_update/CRPropa3/build/Testing/Temporary/LastTest.log
Use "--rerun-failed --output-on-failure" to re-run the failed cases verbosely.
The test fails without output, which isn't super helpful. I did view a similar issue on GitHub: https://github.com/CRPropa/CRPropa3/issues/316
As @rafaelab suggested, I made sure that the assertEquals() in the test file were replaced by assertEqual(), and they already were.
Specifically, I get issues with this block of code:
#stack all maps
crMap = np.zeros(49152)
for pid in M.getParticleIds():
energies = M.getEnergies(int(pid))
for i, energy in enumerate(energies):
crMap += M.getMap(int(pid), energy * crpropa.eV )
When I run this, my Jupyter kernel dies every time. I suspect this is related to the test #17 SegFault, as this exact block of code exists inside the testMagneticLensPythonInterface test file under "test ParticleMapsContainer()".
Any hint as to what could be going wrong would be very helpful. Thank you so much!
Dear developers,
I ran into a Segmentation Fault while installing CRPropa.
System Information:
Here is the test failing:
The test fails without output, which isn't super helpful. I did view a similar issue on GitHub: https://github.com/CRPropa/CRPropa3/issues/316 As @rafaelab suggested, I made sure that the assertEquals() in the test file were replaced by assertEqual(), and they already were.
I was stubborn and decided to use CRPropa anyway. The issue I run into occurs when I run one of the examples listed on the documentation page: https://crpropa.github.io/CRPropa3/pages/example_notebooks/galactic_lensing/lensing_cr.v4.html
Specifically, I get issues with this block of code:
When I run this, my Jupyter kernel dies every time. I suspect this is related to the test #17 SegFault, as this exact block of code exists inside the testMagneticLensPythonInterface test file under "test ParticleMapsContainer()".
Any hint as to what could be going wrong would be very helpful. Thank you so much!