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CRPropa / CRPropa3

CRPropa is a public astrophysical simulation framework for propagating extraterrestrial ultra-high energy particles. https://crpropa.github.io/CRPropa3/
https://crpropa.desy.de
GNU General Public License v3.0
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make fails at testGalacticMagneticLens #97

Closed carlosblanco2718 closed 8 years ago

carlosblanco2718 commented 8 years ago

I get the following error when trying to 'make'. using ubuntu 16.04 &

'The CXX compiler identification is GNU 5.4.0'

:~/Software/crpropa/CRPropa3/build$ make [ 4%] Built target healpix_base [ 8%] Built target kiss [ 9%] Built target pugixml [ 17%] Built target HepPID [ 18%] Building Fortran object libs/sophia/CMakeFiles/sophia.dir/sophiainterface.f.o [ 19%] Linking Fortran static library libsophia.a [ 19%] Built target sophia [ 36%] Built target dint [ 40%] Built target eleca Scanning dependencies of target crpropa [ 41%] Building CXX object CMakeFiles/crpropa.dir/src/Random.cpp.o [ 42%] Building CXX object CMakeFiles/crpropa.dir/src/Clock.cpp.o [ 42%] Building CXX object CMakeFiles/crpropa.dir/src/ModuleList.cpp.o [ 43%] Building CXX object CMakeFiles/crpropa.dir/src/Module.cpp.o [ 44%] Building CXX object CMakeFiles/crpropa.dir/src/Candidate.cpp.o [ 44%] Building CXX object CMakeFiles/crpropa.dir/src/EmissionMap.cpp.o [ 45%] Building CXX object CMakeFiles/crpropa.dir/src/ParticleState.cpp.o [ 46%] Building CXX object CMakeFiles/crpropa.dir/src/ParticleID.cpp.o [ 47%] Building CXX object CMakeFiles/crpropa.dir/src/ParticleMass.cpp.o [ 47%] Building CXX object CMakeFiles/crpropa.dir/src/ProgressBar.cpp.o [ 48%] Building CXX object CMakeFiles/crpropa.dir/src/Cosmology.cpp.o [ 49%] Building CXX object CMakeFiles/crpropa.dir/src/Source.cpp.o [ 49%] Building CXX object CMakeFiles/crpropa.dir/src/Common.cpp.o [ 50%] Building CXX object CMakeFiles/crpropa.dir/src/PhotonBackground.cpp.o [ 51%] Building CXX object CMakeFiles/crpropa.dir/src/PhotonPropagation.cpp.o [ 52%] Building CXX object CMakeFiles/crpropa.dir/src/GridTools.cpp.o [ 52%] Building CXX object CMakeFiles/crpropa.dir/src/XmlExecute.cpp.o [ 53%] Building CXX object CMakeFiles/crpropa.dir/src/module/BreakCondition.cpp.o [ 54%] Building CXX object CMakeFiles/crpropa.dir/src/module/Boundary.cpp.o [ 54%] Building CXX object CMakeFiles/crpropa.dir/src/module/Observer.cpp.o [ 55%] Building CXX object CMakeFiles/crpropa.dir/src/module/SimplePropagation.cpp.o [ 56%] Building CXX object CMakeFiles/crpropa.dir/src/module/PropagationCK.cpp.o [ 57%] Building CXX object CMakeFiles/crpropa.dir/src/module/ElectronPairProduction.cpp.o [ 57%] Building CXX object CMakeFiles/crpropa.dir/src/module/NuclearDecay.cpp.o [ 58%] Building CXX object CMakeFiles/crpropa.dir/src/module/PhotoPionProduction.cpp.o [ 59%] Building CXX object CMakeFiles/crpropa.dir/src/module/PhotoDisintegration.cpp.o [ 59%] Building CXX object CMakeFiles/crpropa.dir/src/module/Redshift.cpp.o [ 60%] Building CXX object CMakeFiles/crpropa.dir/src/module/Output.cpp.o [ 61%] Building CXX object CMakeFiles/crpropa.dir/src/module/TextOutput.cpp.o /home/carlos/Software/crpropa/CRPropa3/src/module/TextOutput.cpp: In member function ‘virtual void crpropa::TextOutput::process(crpropa::Candidate) const’: /home/carlos/Software/crpropa/CRPropa3/src/module/TextOutput.cpp:141:25: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] c->getSerialNumber()); ^ /home/carlos/Software/crpropa/CRPropa3/src/module/TextOutput.cpp:166:64: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] p += sprintf(buffer + p, "%10i\t", c->getSourceSerialNumber()); ^ /home/carlos/Software/crpropa/CRPropa3/src/module/TextOutput.cpp:193:32: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] c->getCreatedSerialNumber()); ^ [ 62%] Building CXX object CMakeFiles/crpropa.dir/src/module/HDF5Output.cpp.o [ 62%] Building CXX object CMakeFiles/crpropa.dir/src/module/OutputShell.cpp.o [ 63%] Building CXX object CMakeFiles/crpropa.dir/src/module/OutputROOT.cpp.o [ 64%] Building CXX object CMakeFiles/crpropa.dir/src/module/OutputCRPropa2.cpp.o [ 64%] Building CXX object CMakeFiles/crpropa.dir/src/module/PhotonOutput1D.cpp.o [ 65%] Building CXX object CMakeFiles/crpropa.dir/src/module/PhotonEleCa.cpp.o [ 66%] Building CXX object CMakeFiles/crpropa.dir/src/module/EMCascade.cpp.o [ 67%] Building CXX object CMakeFiles/crpropa.dir/src/module/EMPairProduction.cpp.o [ 67%] Building CXX object CMakeFiles/crpropa.dir/src/module/EMDoublePairProduction.cpp.o [ 68%] Building CXX object CMakeFiles/crpropa.dir/src/module/EMTripletPairProduction.cpp.o [ 69%] Building CXX object CMakeFiles/crpropa.dir/src/module/EMInverseComptonScattering.cpp.o [ 69%] Building CXX object CMakeFiles/crpropa.dir/src/module/SynchrotronRadiation.cpp.o [ 70%] Building CXX object CMakeFiles/crpropa.dir/src/module/Tools.cpp.o [ 71%] Building CXX object CMakeFiles/crpropa.dir/src/magneticField/MagneticField.cpp.o [ 72%] Building CXX object CMakeFiles/crpropa.dir/src/magneticField/MagneticFieldGrid.cpp.o [ 72%] Building CXX object CMakeFiles/crpropa.dir/src/magneticField/JF12Field.cpp.o [ 73%] Building CXX object CMakeFiles/crpropa.dir/src/magneticField/PshirkovField.cpp.o [ 74%] Building CXX object CMakeFiles/crpropa.dir/src/Version.cpp.o [ 74%] Building CXX object CMakeFiles/crpropa.dir/src/magneticLens/MagneticLens.cpp.o [ 75%] Building CXX object CMakeFiles/crpropa.dir/src/magneticLens/ModelMatrix.cpp.o [ 76%] Building CXX object CMakeFiles/crpropa.dir/src/magneticLens/Pixelization.cpp.o [ 77%] Building CXX object CMakeFiles/crpropa.dir/src/magneticLens/ParticleMapsContainer.cpp.o [ 77%] Linking CXX shared library libcrpropa.so [ 77%] Built target crpropa [ 79%] Built target gtest [ 80%] Built target gtest_main Scanning dependencies of target testGalacticMagneticLens [ 81%] Building CXX object CMakeFiles/testGalacticMagneticLens.dir/test/testMagneticLens.cpp.o [ 82%] Linking CXX executable testGalacticMagneticLens libcrpropa.so: undefined reference to is_directory(std::string const&)' libcrpropa.so: undefined reference toexecutable_path()' libcrpropa.so: undefined reference to mu::ParserBase::DefineConst(std::string const&, double)' libcrpropa.so: undefined reference tokiss::trim(std::string const&, std::string const&)' libcrpropa.so: undefined reference to kiss::ends_with(std::string const&, std::string const&)' libcrpropa.so: undefined reference toHepPID::particleName(int const&)' libcrpropa.so: undefined reference to eleca::Propagation::InitBkgArray(std::string const&)' libcrpropa.so: undefined reference toeleca::Propagation::ReadTables(std::string const&)' libcrpropa.so: undefined reference to mu::ParserBase::SetExpr(std::string const&)' libcrpropa.so: undefined reference toconcatpath(std::string const&, std::string const&)' libcrpropa.so: undefined reference to DintEMCascade::DintEMCascade(int, int, std::string, double, double, double, double)' libcrpropa.so: undefined reference tomu::ParserBase::DefineVar(std::string const&, double)' collect2: error: ld returned 1 exit status CMakeFiles/testGalacticMagneticLens.dir/build.make:108: recipe for target 'testGalacticMagneticLens' failed make[2]: * [testGalacticMagneticLens] Error 1 CMakeFiles/Makefile2:76: recipe for target 'CMakeFiles/testGalacticMagneticLens.dir/all' failed make[1]: * [CMakeFiles/testGalacticMagneticLens.dir/all] Error 2 Makefile:138: recipe for target 'all' failed make: *\ [all] Error 2

TobiasWinchen commented 8 years ago

Dear Carlos,

I was not able to reproduce the issue on a fresh installation of Ubuntu 16.04, it thus has likely to do something with your local environment. Please check any changes you made to your local environment, in particular if there is an old installation somewhere in your LD_LIBRARY_PATH.

Cheers,

Tobi