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CSB5 / INC-Seq

INC-Seq: Accurate single molecule reads using nanopore sequencing
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Errno 8 Exec format error #5

Closed rmlb closed 5 years ago

rmlb commented 7 years ago

**Hi! I get the following error when I try to execute inc-seq.py with the sample input data. I've tried running it on Linux or OSX with the same problem. Do you have any idea what's causing this error?

Thank you!**

users-MacBook-Air-2:INC-Seq-master owner$ ./inc-seq.py -i data/inc_seq_test_read.fa -o consensus.fa ---------- Processing read 1 ---------- Max number of segments found: 20 Number of segments of the candidate strech: 20 Candidate read found! Traceback (most recent call last): File "./inc-seq.py", line 160, in sys.exit(main(sys.argv[1:])) File "./inc-seq.py", line 147, in main args.seg_cov, args.iterative) File "./inc-seq.py", line 24, in callBuildConsensus seg_cov, iterative) File "/Users/owner/Downloads/INC-Seq-master/utils/buildConsensus.py", line 289, in consensus_blastn consensus = pbdagcon(tmpname+'.m5', 0) File "/Users/owner/Downloads/INC-Seq-master/utils/buildConsensus.py", line 207, in pbdagcon proc = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE) File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 711, in init errread, errwrite) File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 1343, in _execute_child raise child_exception OSError: [Errno 8] Exec format error

lch14forever commented 7 years ago

I guess the problem is because PBDAGCON is not executable (by you).

Can you run util/pbdagcon?

What did you get from ls -l util/ ?