search

CSB5 / OPERA-MS

OPERA-MS - Hybrid Metagenomic Assembler
Other
89 stars 17 forks source link

Error during installation step: perl OPERA-MS.pl check-dependency #84

Open bjkramerumnedu opened 1 year ago

bjkramerumnedu commented 1 year ago

I get this error when I use the above command:

Can't locate Statistics/R.pm in @INC (you may need to install the Statistics::R module) (@INC contains: /panfs/jay/groups/32/sheikc/bjkramer/miniconda3/lib/site_perl/5.26.2/x86_64-linux-thread-multi /panfs/jay/groups/32/sheikc/bjkramer/miniconda3/lib/site_perl/5.26.2 /panfs/jay/groups/32/sheikc/bjkramer/miniconda3/lib/5.26.2/x86_64-linux-thread-multi /panfs/jay/groups/32/sheikc/bjkramer/miniconda3/lib/5.26.2 .) at OPERA-MS.pl line 11. BEGIN failed--compilation aborted at OPERA-MS.pl line 11.

Is there a reason why this might be happening?

jsgounot commented 1 year ago

Hi, as indicated in the error message you need to download the Perl statistic module. There are multiple dependencies, including several Perl modules you need to run opera-ms. Please see this answer if you use conda.