CSB5 / lofreq

LoFreq Star: Sensitive variant calling from sequencing data
http://csb5.github.io/lofreq/
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Lofreq vcfplot - python version 3 support #143

Open saradunaj opened 8 months ago

saradunaj commented 8 months ago

Hi, Curious when or how to best modify your vcfplot script to work with python 3. I tried both the conda installation of lofreq and I tried directly running your repo's lofreq v2 script and I get the same error:

/lofreq/src/tools/scripts/lofreq2_vcfplot.py lofreq.vcf

Traceback (most recent call last): File "/lofreq/src/tools/scripts/lofreq2_vcfplot.py", line 54, in from lofreq_star.utils import complement, now File "/lofreq/src/tools/lofreq_star/init.py", line 2, in assert sys.version_info.major == 2 and sys.version_info.minor == 7, ("Need Python 2.7") AssertionError: Need Python 2.7