CSB5 / lofreq

LoFreq Star: Sensitive variant calling from sequencing data
http://csb5.github.io/lofreq/
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lowfreq "not available from current channels" #146

Closed antonkratz closed 5 days ago

antonkratz commented 5 days ago

I am unable to install lowfreq with conda. I tried on a M3 based Ubuntu and a Intel Ubuntu. I get the error below. But conda seems available from current channels actually?! https://anaconda.org/bioconda/lofreq

(base) kratz@linux:~$ conda install lowfreq
Channels:
 - conda-forge
 - bioconda
 - defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed

PackagesNotFoundError: The following packages are not available from current channels:

  - lowfreq

Current channels:

  - https://conda.anaconda.org/conda-forge
  - https://conda.anaconda.org/bioconda
  - defaults

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.
andreas-wilm commented 5 days ago

Hi there,

The name is lofreq not lowfreq. But if there are any problems with the conda packages in general, please reach out to Bioconda or the resp. person instead

Andreas