fjug
commented
5 years ago Hi @Pepperify, what happened, did it work at the end, or why did you close this issue?
Closed Pepperify closed 5 years ago
fjug
commented
5 years ago Hi @Pepperify, what happened, did it work at the end, or why did you close this issue?
Pepperify
commented
5 years ago Hi fjug and thank you for the reply.
I closed the issue because I realized it I created it under the CSBDeep Website. Then I found a recent thread where it was adviced to downgrade Tensorflow to 1.3.0. Just working on it! I'll let you know how it goes.
Pepperify
commented
5 years ago Ok, I moved my discussion to an existing thread:
https://github.com/CSBDeep/CSBDeep_fiji/issues/16#issuecomment-443527236
Thanks
Hi and thank you for the awesome code for image restoration.
I was able to train my model succesfully in Collaboratory and saved it on my disc. However, when I select "Run your net work" from the menu I get following error message: "The module "mpicbg.csbd.commands.GenericNetwork" failed to initialize."
I would be grateful for any ideas how to solve this. Thanks, Peter
Console gives me a following information:
[INFO] imagej-tensorflow version: 1.0.1 [INFO] tensorflow version: 1.6.0 [INFO] The current library path is: LD_LIBRARY_PATH=null [INFO] Couldn't load tensorflow GPU support. [INFO] If the problem is CUDA related, make sure CUDA and cuDNN are in the LD_LIBRARY_PATH. [INFO] Using CPU version from jar file. modelInitialized [ERROR] null org.scijava.module.MethodCallException: Error executing method: mpicbg.csbd.commands.GenericNetwork#modelInitialized at org.scijava.module.MethodRef.execute(MethodRef.java:74) at org.scijava.module.AbstractModuleItem.initialize(AbstractModuleItem.java:202) at org.scijava.module.AbstractModule.initialize(AbstractModule.java:95) at org.scijava.module.process.InitPreprocessor.process(InitPreprocessor.java:62) at org.scijava.module.ModuleRunner.preProcess(ModuleRunner.java:105) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:157) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:127) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:66) at org.scijava.thread.DefaultThreadService$3.call(DefaultThreadService.java:238) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.scijava.module.MethodRef.execute(MethodRef.java:70) ... 12 more Caused by: java.lang.NullPointerException at org.scijava.io.http.HTTPLocation.(HTTPLocation.java:101)
at org.scijava.io.http.HTTPLocation.(HTTPLocation.java:114)
at mpicbg.csbd.util.IOHelper.loadFileOrURL(IOHelper.java:25)
at mpicbg.csbd.network.DefaultNetwork.loadModel(DefaultNetwork.java:51)
at mpicbg.csbd.network.task.DefaultModelLoader.loadNetwork(DefaultModelLoader.java:41)
at mpicbg.csbd.network.task.DefaultModelLoader.run(DefaultModelLoader.java:21)
at mpicbg.csbd.commands.CSBDeepCommand.prepareInputAndNetwork(CSBDeepCommand.java:288)
at mpicbg.csbd.commands.GenericNetwork.prepareInputAndNetwork(GenericNetwork.java:200)
at mpicbg.csbd.commands.GenericNetwork.modelInitialized(GenericNetwork.java:102)
... 17 more