CSBiology BioFSharp issues

CSBiology / BioFSharp

Open source bioinformatics and computational biology toolbox written in F#.

https://csbiology.github.io/BioFSharp/

MIT License

107 stars 32 forks source link

issues

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Add RNA Seq normalization methods

#136 ScheidTo closed 6 months ago
3
[Docs] Was image created by mermaid?

#135 Fxplorer closed 8 months ago
1
[Feature Request] Addition of adjusted PValues to GSEA Result

#134 bvenn opened 1 year ago
0
Update GSEA docu

#133 bvenn opened 1 year ago
0
[BUG] Hypergeometric Distribution CDF update will change input

#132 Freymaurer opened 2 years ago
0
[Feature Request] OBO parser improvements

#131 HLWeil opened 2 years ago
0
[BUG] Pairwise alignment does not correctly handle gap opening costs

#130 HLWeil opened 2 years ago
0
add obo verbosity

#129 bvenn closed 2 years ago
0
OBO parser verbosity

#128 bvenn closed 2 years ago
0
Bump SharpZipLib from 1.3.1 to 1.3.3 in /src/BioFSharp.BioContainers

#127 dependabot[bot] opened 2 years ago
0
update references

#126 bvenn closed 2 years ago
0
#124 fix gsea typo

#125 bvenn closed 2 years ago
1
Ontology enrichment field name need revision

#124 bvenn closed 2 years ago
0
[WIP] Update docs

#123 kMutagene closed 3 years ago
1
[BUG] Using pretty printers on BioSeq after translation results in an empty source sequence

#122 kMutagene opened 3 years ago
5
add mid pvalue description to GSEA documentation

#121 bvenn closed 3 years ago
0
[Feature Request] Add more Proteases

#120 ZimmerD opened 3 years ago
0
[Feature Request] Update or move dppop

#119 kMutagene opened 3 years ago
0
[BUG] Obo.parseOboTerms too strict about parsing whitespace

#118 Freymaurer opened 3 years ago
0
[Feature Request] Seamless phylogenetic tree building from sequences using ClustalO wrapper

#117 HLWeil opened 3 years ago
0
[BUG] ClustalO wrapper example from the docs is not working correctly

#116 kMutagene opened 3 years ago
8
Fix typo: monoicsotopic -> monoisotopic

#115 dawedawe closed 3 years ago
1
Fix typo: monoicsotopic -> monoisotopic

#114 dawedawe closed 3 years ago
2
[BUG] Fasta writer EOL may cause downstream tools being unable to parse the fasta

#113 kMutagene opened 3 years ago
0
BioFSharp Project rejuvenation

#112 kMutagene opened 3 years ago
0
[BUG] BioFSharp.IO.Obo.parseOboTerms parsing error with ':'

#111 Freymaurer closed 3 years ago
0
#30: Add phyl tree tests

#110 graemevissers closed 4 years ago
1
#30: Add nucleotide tests

#109 graemevissers closed 4 years ago
0
#30: Add amino acid tests

#108 graemevissers closed 4 years ago
2
#30: Add AminoAcids tests

#107 graemevissers closed 4 years ago
1
#30 : Add BioSeq tests

#106 graemevissers closed 4 years ago
1
[Feature Request] Add installation procedure to Readme

#105 ZimmerD opened 4 years ago
0
[Feature Request] Rework ModificationInfo's implementation of IBioItem

#104 kMutagene opened 4 years ago
0
#30 : Add bio list tests

#103 graemevissers closed 4 years ago
1
[BUG] Include all possible bin sizes within GSEA (0 and 1)

#102 bvenn opened 4 years ago
0
Add bio array tests

#101 graemevissers closed 4 years ago
1
Add bio array tests

#100 graemevissers closed 4 years ago
0
Move tests to netcore and add code coverage via altcover

#99 kMutagene closed 4 years ago
0
Digestion

#98 ZimmerD closed 4 years ago
1
[Feature Request] Complete Digestion module

#97 ZimmerD closed 4 years ago
1
[Docs] Reference to FastA Histrogram is incorrect

#96 bvenn opened 4 years ago
1
[Feature Request]Rework BioCollections

#95 kMutagene opened 4 years ago
0
[Feature Request]Extend OBO parser to fully support the obo flat file 1.4 specifications

#94 kMutagene opened 4 years ago
0
[BUG]OBO parser skips all relationships but the last

#93 kMutagene closed 4 years ago
3
[Feature Request]Add Entrez query builder

#92 kMutagene opened 4 years ago
0
Sync with developer - dont squash developer commits again :(

#91 kMutagene closed 4 years ago
0
[Feature Request] Move tests to .net core

#90 kMutagene closed 4 years ago
1
completely revamp buildchains

#89 kMutagene closed 4 years ago
0
Update with changes from developer for 1.2.0

#88 kMutagene closed 4 years ago
0
[Feature Request] Add high-level functionality for Entrez cgi DSLs

#87 kMutagene opened 4 years ago
0