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CSBiology / TMEA

Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.
https://www.mdpi.com/1099-4300/22/9/1030
MIT License
8 stars 3 forks source link

Add convenience functions for TMEA results #5

Open kMutagene opened 3 years ago

kMutagene commented 3 years ago

Convert and save different parts of the result as frame , e.g. potentials only, constraints only, etc.

Most important: save full result in a format that can be consumed again to prevent unnecessary runs of the pipeline

bvenn commented 2 years ago

When writing the characterization frame the TMEAResult.invertSignsFor function does not effect the outcome

TMEAResult.toTMEACharacterizationFrame(2,0.05,id) (TMEAResult.invertSignsFor [|3|] tmeaRes) is equal to TMEAResult.toTMEACharacterizationFrame(2,0.05,id) tmeaRes

It would be expected that the weights signs within the result frame are inverted.