Hi, thanks a lot for creating this very interesting tool!
I am trying to import cellcharter and I get the following error during the import. It is an issue with spatialdata(0.0.12)itself but would be great to get some help to go about it:
and I used the below to to install other dependencies
conda create -n cellcharter-env -c conda-forge python=3.10 mamba
conda activate cellcharter-env
mamba install pytorch==1.13.1 torchvision==0.14.1 torchaudio==0.13.1 pytorch-cuda=11.7 -c pytorch -c nvidia
pip install cellcharter
pip install scvi-tools==1.0.3
marcovarrone
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8 months ago
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Hi, thanks a lot for creating this very interesting tool!
I am trying to import cellcharter and I get the following error during the import. It is an issue with spatialdata(0.0.12)itself but would be great to get some help to go about it:
and I used the below to to install other dependencies conda create -n cellcharter-env -c conda-forge python=3.10 mamba conda activate cellcharter-env mamba install pytorch==1.13.1 torchvision==0.14.1 torchaudio==0.13.1 pytorch-cuda=11.7 -c pytorch -c nvidia pip install cellcharter pip install scvi-tools==1.0.3
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