CSU-BME / pathology_SSL

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Data request on Dataset-PT and Dataset-HAC #1

Open yangsenwxy opened 1 year ago

yangsenwxy commented 1 year ago

Dear author,

Hope this email finds you well. My name is Xiyue Wang. I am a current PhD student at Sichuan University, China.

I see your paper "Accurate recognition of colorectal cancer with semi-supervised deep learning on pathological images". Congratulations! The paper states that the data can be requested. I am working on weakly-supervised WSI classification. I would like to use the data as my external validation. Could you share it with me? It will help me a lot. Thank you very much! By the way, I emailed the corresponding author of the article a long time ago, and no one got back to me

Best regards, Xiyue Wang

CSU-BME commented 1 year ago

Hi Wang,

Thank you for your interest in our work. Please download the data from the following link, which is valid for 7 days.

https://pan.baidu.com/s/1dJSzui2fXhIdHjAmDJG4UQ 提取码: en6a

The data included 500 wsi and labels from Dataset-PT. Thanks.

GangYu

@.*** |

---- Replied Message ---- | From | @.> | | Date | 12/15/2022 19:58 | | To | @.> | | Cc | @.***> | | Subject | [CSU-BME/pathology_SSL] Data request on Dataset-PT and Dataset-HAC (Issue #1) |

Dear author,

Hope this email finds you well. My name is Xiyue Wang. I am a current PhD student at Sichuan University, China.

I see your paper "Accurate recognition of colorectal cancer with semi-supervised deep learning on pathological images". Congratulations! The paper states that the data can be requested. I am working on weakly-supervised WSI classification. I would like to use the data as my external validation. Could you share it with me? It will help me a lot. Thank you very much! By the way, I emailed the corresponding author of the article a long time ago, and no one got back to me

Best regards, Xiyue Wang

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.***>

yangsenwxy commented 1 year ago

Dear GangYu, Thank you very much for your quick reply, I have downloaded this data,I would like to ask if the rest of the data can be accessed? ,''The remaining WSIs in Dataset-PT and Dataset-HAC can be obtained by contacting the corresponding author by Email". Because the datasets (>6TB) are too large, I can email you the hard drive. I would like to use the data as my external validation.

Thanks Xiyue Wang

CSU-BME commented 1 year ago

Dear Wang, May I know what kind of evaluation you need to do? Does this evaluation require a data set of more than 10,000 people? If the evaluation really needs more, we can share more WSIs.

If you want access to the whole data set, you can negotiate with the corresponding authors to collaborate with us on pathology studies.

GangYu

@.*** |

---- Replied Message ---- | From | @.> | | Date | 12/15/2022 20:23 | | To | @.> | | Cc | @.> , @.> | | Subject | Re: [CSU-BME/pathology_SSL] Data request on Dataset-PT and Dataset-HAC (Issue #1) |

Dear GangYu, Thank you very much for your quick reply, I have downloaded this data,I would like to ask if the rest of the data can be accessed? ,''The remaining WSIs in Dataset-PT and Dataset-HAC can be obtained by contacting the corresponding author by Email". Because the datasets (>6TB) are too large, I can email you the hard drive. I would like to use the data as my external validation.

Thanks Xiyue Wang

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>

yangsenwxy commented 1 year ago

Dear Gang Yu, I am working on weakly-supervised WSI classification, I developed an algorithm on colorectal data, but I want more data to verify my algorithm, your original data we have verified auc 0.99, I feel that more data is needed , to verify our performance, for example, can you share more 500WSI? Or 1000WSI? Thanks Xiyue Wang

CSU-BME commented 1 year ago

Dear Wang,

Congratulations, no problem, I will upload more 500 WSI as soon as possible and share with you. It will take about a week since school is out.

GangYu

@.*** |

---- Replied Message ---- | From | @.> | | Date | 12/15/2022 21:08 | | To | @.> | | Cc | @.> , @.> | | Subject | Re: [CSU-BME/pathology_SSL] Data request on Dataset-PT and Dataset-HAC (Issue #1) |

Dear Gang Yu, I am working on weakly-supervised WSI classification, I developed an algorithm on colorectal data, but I want more data to verify my algorithm, your original data we have verified auc 0.99, I feel that more data is needed , to verify our performance, for example, can you share more 500WSI? Or 1000WSI? Thanks Xiyue Wang

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>

yangsenwxy commented 1 year ago

Dear Gang Yu, Wow, thank you very much, can I have your wechat or email? My email is xiyue.wang.scu@gmail.com.

Thanks Xiyue Wang

CSU-BME commented 1 year ago

Hi, Dr. Wang

Please find more WSIs in link: 链接: https://pan.baidu.com/s/1mNgeW-AqhA5NwWlGnQ6oMg 提取码: xd8m

GangYu

@.*** |

---- Replied Message ---- | From | @.> | | Date | 12/15/2022 21:20 | | To | @.> | | Cc | @.> , @.> | | Subject | Re: [CSU-BME/pathology_SSL] Data request on Dataset-PT and Dataset-HAC (Issue #1) |

Dear Gang Yu, Wow, thank you very much, can I have your wechat or email? My email is @.***

Thanks Xiyue Wang

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>

yangsenwxy commented 1 year ago

Dear Gang Yu, Wow,Thank you very much for your help. Is the new data under group19? I don't seem to see the corresponding label

Thanks Xiyue Wang