Closed jwli-code closed 3 days ago
Whether the software generates an index and then deletes it. An error occurs in the subsequent process
Hi @jwli-code,
Could you please provide your complete run command? I just tested the SIF file and encountered no errors.
Best regards, Kang
singularity run -B /public/home/00.data:/public/home/00.data -B /public/home/HiTE:/public/home/HiTE --pwd /HiTE /public/home/HiTE/HiTE.sif python main.py --genome /public/home/00.data/${line}.chrplus.genome.fasta --thread 15 --outdir /public/HiTE/${line} --annotate 1 --plant 1 --intact_anno 1
My HPC network is currently unstable, so I am unable to re-download the image for testing at this moment. I will re-download and test it later. Thank you for your patience.
Is there a more convenient way to download sif files to prevent errors caused by network reasons.
I tried downloading HiTE and other images from Docker Hub, but all attempts failed, possibly due to network issues with Docker Hub. You might want to try running HiTE using Conda instead, as the installation commands are quite straightforward.
Thank you very much
An error occurred when running the sif file. --annotate 1 --plant 1 --intact_anno 1