Open arnikz opened 4 years ago
For your problem, you should change 'your file path' to your own path, like '/home/.../your_vcf.vcf', in line 78 of Generate_Deletion_Image.py. However, I read some codes of DeepSV, I found a lot of mistakes, which means that you should change plenty of codes then you can really run it.
I also found that these scripts contain many mistakes, and are not consistent with what are described in the paper published on BMC bioinformatics
Hi,
I've tried to run the script(s) as described in the
README.md
but got stuck on the way. Please see my suggestions in this PR. The command-line interface does not include e.g.-h|--help
(nor input VCF file).Could you add a working example including a small dataset? Thank you.